Scaffold Ga0210394_10000065

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000065
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 255779
• Total Scaffold Genes: 249
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 164 (65.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000275	Metagenome / Metatranscriptome	1391	Y
F000795	Metagenome / Metatranscriptome	887	Y
F001431	Metagenome / Metatranscriptome	696	Y
F017747	Metagenome / Metatranscriptome	239	Y
F028589	Metagenome / Metatranscriptome	191	Y
F061220	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000065143	F028589	GAGG	LILVEGAFRCKRSVRAGYKIPTSRKGREKWGTRFRYTSSIVKRIVSVLLLVLIVAALGFADETSFRHVKVPNLQGKQIKAVLTFSDNDKAVEVRPAKGDPVNISYSQIDKCSYEYTNALMGDKNYWLKVEYHDQDAHKVLVLLMTKNNYIRILDALKTHTGIDAEIVGNAKKR
Ga0210394_10000065171	F000795	N/A	MSTQTIELEGFEIELASELYCDRGRDHRELVDRARTDRRRLGHNVDESAVLCVRCMKAIALKA
Ga0210394_10000065205	F000275	GGAGG	LVAEFVSSGMRRSEFCKSRGLSFSTLDRHLKKWRWKRRRRPASSAGRLVKVELAARKSPPTQHEPSCGLAVVLSGDRRIEVQRDFDMNTFERLVNALERV
Ga0210394_1000006557	F061220	GGAGG	MRLATLFCSLLALAGISAAQDTNFPVGPQYLMTSGSPLFAQPIATPSLSLEAPLPGIPSLPQIGPAVENEPFVANPELRRQADLFPVYYGYQPISDVEITSAEPTIALPASILDSGVTGMTTVQSLRLRGYGVPLGDTAAFWKSHRPHAIRVYTNADVQRLHASWPKNVPKSGAPFLAFFARSGDFDSFFSRRWPILTSRLLRP
Ga0210394_1000006560	F017747	N/A	MLAILPLSLVADDVAAMLHTTGGGVLVNKYPAPESIALFSNDLIETQNTASARINVVGSTADIRPGTMIQFEGDELVLDHGSLSVNTSRGLRVRVGCLIVTPVNNAEWTQYDVADVDGKVTVSALKNDVNIDARSRSPQQAKASAHSDRVTVREGEQKSRDERCGAADIKTKPGGRFSGVGAIMNSPWAIGAGIAGVGVMACLGVFCRGDDPMSPAKP
Ga0210394_1000006566	F001431	AGG	MSTIQDVSAEQLAKVFYHYREALAHDGNGHEIKERSSCWDRASQDERKLMVAAARLALLELATTPVQRDPARKYYAKPGEAEWGC