Scaffold Ga0210394_10000048

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000048
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 285100
• Total Scaffold Genes: 238
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 180 (75.63%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002273	Metagenome / Metatranscriptome	576	Y
F021622	Metagenome / Metatranscriptome	218	Y
F024610	Metagenome / Metatranscriptome	205	Y
F027914	Metagenome / Metatranscriptome	193	Y
F029511	Metagenome / Metatranscriptome	188	Y
F069818	Metagenome / Metatranscriptome	123	Y
F076314	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000048109	F002273	GGAG	MGGDVIGLVAVVLTCGIPLALMYTFYRVRKLRTEERLAALARGTEIPMEPELSQYARSRRAGVLLVSGGVGFILMFAMIARVLGEPETLVASAFGILPLAVGMGYFLDAALIRRDLKAS
Ga0210394_10000048228	F027914	N/A	MRGELSLVAASLLVLLSVELWKWQFPAMAAGEKLAWVITALRMKIPFSCSALIRR
Ga0210394_10000048229	F024610	AGGA	MKSNTLVRSLALAAALAITVPLFAKPVAKSLAVPHPVKFGKVDVKAGDYRAMIDDNHITLLNGRKVIAESAGRWEDRSQKSPYTVIVSNEDGRVLELRFEGKAQVFILSE
Ga0210394_1000004830	F076314	GAG	MQATPRRARPTEAFLIALFSLLAVLVLAAFQFGDNNGLNNMPFAQVQRLVSDLPKAQKMASDGNLELLAGKPVPGESRTLRGELTDANCFLTTHTHAYDHAFCAKFCAAAGSPLVFASDQGGLVYVVLPARNGVELPGRALDLIGVPGIVLRGRTLGADGVRSFAVESVQP
Ga0210394_1000004842	F029511	GGCGG	MLYWGSGPALGLLTCMGYGIFLLGSLFLWRNREELCLWIEDEFSAFRRNLSRYESVGPFYLPRTESRLRAIPAGFLDSVSRFPHRRLSPGAFLLMLGLLLFTLDFFI
Ga0210394_1000004878	F069818	N/A	MRSKSEQAYVLFLLLGAILLAAQLHCCVDVNSRTIDSHVCPICSAAGTAVATPSLIVEMAPAINRLEVSGVAVSVPVVVPRSIAPRGPPAA
Ga0210394_1000004894	F021622	AGG	MPANFSPPGYRWFHFFRNAPTRVGFYTGVWLSLVFVAWIVIANRVPFLEPLARQRNAAAALLLLLIAGMPVLRFLREPADLLISGLLAWSVMTLAYRILSLKFVLLQGYYSSFHVFVLGAVTYLLFATLSWIGMIVWRAREAQGTHTSR