NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000047

Scaffold Ga0210394_10000047


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000047 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)295582
Total Scaffold Genes282 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)219 (77.66%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000175Metagenome / Metatranscriptome1756Y
F000987Metagenome / Metatranscriptome813Y
F006150Metagenome / Metatranscriptome380Y
F021069Metagenome / Metatranscriptome220Y
F024841Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_10000047100F021069GGAGMAGKWLEIAQKMARDARAGLAIEKKRLNEILAERQRKQIPSSSQSSR
Ga0210394_10000047172F000175AGGMAVVDEGRKRVLLIAASILAARKLAQHDGGKRVPATVAAISDAVRWAEEIMREIDERWPARDA
Ga0210394_10000047213F000987AGGAMSIQEVSAEQLAELFHRYHQALHSDLGSRATKLDADAWEQMPQQEKTRLVSAARLALLELTSRAAERENSRRYFATPGEAEWGC
Ga0210394_10000047214F024841GGAGGMFVTAAITVLCTTGVAFYARFLAALCRECKPRQGGHWVRLRLGSGEDAVVELPERKKPVTRAA
Ga0210394_10000047280F006150GGAMGRASVVGLMMCLLAAPFALGSGNQETVEELKARVARLGVGDRPPLCLRIAELQLDAARKYYLAGEIEKGQSALADVVAFAELDRDSAIQSHKHEKQSEIAIRKMARKLGDMKHTVSREEQEQMQKTIDRLEQVRDDLLAAMFPRGKK
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