Scaffold Ga0210394_10000041

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000041
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 303208
• Total Scaffold Genes: 278
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 181 (65.11%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000138	Metagenome / Metatranscriptome	1954	Y
F000299	Metagenome / Metatranscriptome	1341	Y
F000378	Metagenome / Metatranscriptome	1211	Y
F005654	Metagenome / Metatranscriptome	394	Y
F021815	Metagenome / Metatranscriptome	217	Y
F031621	Metagenome / Metatranscriptome	182	Y
F084505	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_100000411	F000378	GGAGG	MEDRAPVVSSTGIDQSSSTATTSAVRKHEGRGAWVLTCYGICGLALFGVLAYFFSDFISH
Ga0210394_10000041127	F005654	GGA	MNEDTFQSRQRHRGVAEKSAPVLYTAKDFQLEVLGRLAEMQSLTESLEESWDRKLEAVKDQRLLKFDSRVLIALGAIALSLTGYVIQEARTTARQDSELETTKARVMRLEQIAAINTEARIKTEVQLGELREGQTEIKALIQAQAIASKKISPRD
Ga0210394_10000041133	F021815	GGAGG	MSRDHRDKKGSVGVELKYCEHCGALWVRECGSGMVYCDNCRPKVADLPAPKLKLSRLILPIRPHTEIEEYEFEIDVEDTSDFEAAGGAA
Ga0210394_10000041177	F000138	AGGAG	MHMQLIDSYRIPFSTLMSYIPVIATLVTTFFSVILARATLRYVEATDKGLALAREEFEREWSPDLHIKMERVSATEAKIIVTNLAKTSVLLQLLQLRKISHATPFERCRLNDPLVGGMTWTQEMGKRIMACTGNEFEGPIAASMTFYAAGRMFRTDWFRSQIVVRDGRIVSLEPSNMPARRVRVLERKGPERRREFVQDVTAQVAAEKINTKPDESFFVTGA
Ga0210394_1000004130	F000299	GAG	MNASELFWGDKYMENGQKVSASMQPMDRYDVGHVQEVIRQAHGELRHLLHQRSEIMKRIGTVKQTISGLANLFGDGVLNEELMELVDRKSSGRQPGFTKACRMILMQAGRAMNARDICDYFQQKMPALLARHKDPMASVTTVLNRLVEYGEAQAVLSNGRRAWRWVAEAPVEAPASSTEAGLIA
Ga0210394_1000004145	F084505	GGGGG	MFPPELERNAFRASNGEFGWTRAQIPSVVDVLRFHRIGILGGELWWVRDGIKDWVGVIPQRLGSPGVYVWETKREPAELWLDFINRSASNTLAMVEQWPMPEDLPPNLPGKILYNLTWVSEAQFNDLGTRPVL
Ga0210394_1000004179	F031621	AGGA	MSVDAKKSMGWTVVLILLGMAALYGGLKWLSLLIPAALVVWYTARPGFRTGRN