Basic Information | |
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Taxon OID | 3300021420 Open in IMG/M |
Scaffold ID | Ga0210394_10000041 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 303208 |
Total Scaffold Genes | 278 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 181 (65.11%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000138 | Metagenome / Metatranscriptome | 1954 | Y |
F000299 | Metagenome / Metatranscriptome | 1341 | Y |
F000378 | Metagenome / Metatranscriptome | 1211 | Y |
F005654 | Metagenome / Metatranscriptome | 394 | Y |
F021815 | Metagenome / Metatranscriptome | 217 | Y |
F031621 | Metagenome / Metatranscriptome | 182 | Y |
F084505 | Metagenome / Metatranscriptome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0210394_100000411 | F000378 | GGAGG | MEDRAPVVSSTGIDQSSSTATTSAVRKHEGRGAWVLTCYGICGLALFGVLAYFFSDFISH |
Ga0210394_10000041127 | F005654 | GGA | MNEDTFQSRQRHRGVAEKSAPVLYTAKDFQLEVLGRLAEMQSLTESLEESWDRKLEAVKDQRLLKFDSRVLIALGAIALSLTGYVIQEARTTARQDSELETTKARVMRLEQIAAINTEARIKTEVQLGELREGQTEIKALIQAQAIASKKISPRD |
Ga0210394_10000041133 | F021815 | GGAGG | MSRDHRDKKGSVGVELKYCEHCGALWVRECGSGMVYCDNCRPKVADLPAPKLKLSRLILPIRPHTEIEEYEFEIDVEDTSDFEAAGGAA |
Ga0210394_10000041177 | F000138 | AGGAG | MHMQLIDSYRIPFSTLMSYIPVIATLVTTFFSVILARATLRYVEATDKGLALAREEFEREWSPDLHIKMERVSATEAKIIVTNLAKTSVLLQLLQLRKISHATPFERCRLNDPLVGGMTWTQEMGKRIMACTGNEFEGPIAASMTFYAAGRMFRTDWFRSQIVVRDGRIVSLEPSNMPARRVRVLERKGPERRREFVQDVTAQVAAEKINTKPDESFFVTGA |
Ga0210394_1000004130 | F000299 | GAG | MNASELFWGDKYMENGQKVSASMQPMDRYDVGHVQEVIRQAHGELRHLLHQRSEIMKRIGTVKQTISGLANLFGDGVLNEELMELVDRKSSGRQPGFTKACRMILMQAGRAMNARDICDYFQQKMPALLARHKDPMASVTTVLNRLVEYGEAQAVLSNGRRAWRWVAEAPVEAPASSTEAGLIA |
Ga0210394_1000004145 | F084505 | GGGGG | MFPPELERNAFRASNGEFGWTRAQIPSVVDVLRFHRIGILGGELWWVRDGIKDWVGVIPQRLGSPGVYVWETKREPAELWLDFINRSASNTLAMVEQWPMPEDLPPNLPGKILYNLTWVSEAQFNDLGTRPVL |
Ga0210394_1000004179 | F031621 | AGGA | MSVDAKKSMGWTVVLILLGMAALYGGLKWLSLLIPAALVVWYTARPGFRTGRN |
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