NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000041

Scaffold Ga0210394_10000041


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000041 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)303208
Total Scaffold Genes278 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)181 (65.11%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000138Metagenome / Metatranscriptome1954Y
F000299Metagenome / Metatranscriptome1341Y
F000378Metagenome / Metatranscriptome1211Y
F005654Metagenome / Metatranscriptome394Y
F021815Metagenome / Metatranscriptome217Y
F031621Metagenome / Metatranscriptome182Y
F084505Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_100000411F000378GGAGGMEDRAPVVSSTGIDQSSSTATTSAVRKHEGRGAWVLTCYGICGLALFGVLAYFFSDFISH
Ga0210394_10000041127F005654GGAMNEDTFQSRQRHRGVAEKSAPVLYTAKDFQLEVLGRLAEMQSLTESLEESWDRKLEAVKDQRLLKFDSRVLIALGAIALSLTGYVIQEARTTARQDSELETTKARVMRLEQIAAINTEARIKTEVQLGELREGQTEIKALIQAQAIASKKISPRD
Ga0210394_10000041133F021815GGAGGMSRDHRDKKGSVGVELKYCEHCGALWVRECGSGMVYCDNCRPKVADLPAPKLKLSRLILPIRPHTEIEEYEFEIDVEDTSDFEAAGGAA
Ga0210394_10000041177F000138AGGAGMHMQLIDSYRIPFSTLMSYIPVIATLVTTFFSVILARATLRYVEATDKGLALAREEFEREWSPDLHIKMERVSATEAKIIVTNLAKTSVLLQLLQLRKISHATPFERCRLNDPLVGGMTWTQEMGKRIMACTGNEFEGPIAASMTFYAAGRMFRTDWFRSQIVVRDGRIVSLEPSNMPARRVRVLERKGPERRREFVQDVTAQVAAEKINTKPDESFFVTGA
Ga0210394_1000004130F000299GAGMNASELFWGDKYMENGQKVSASMQPMDRYDVGHVQEVIRQAHGELRHLLHQRSEIMKRIGTVKQTISGLANLFGDGVLNEELMELVDRKSSGRQPGFTKACRMILMQAGRAMNARDICDYFQQKMPALLARHKDPMASVTTVLNRLVEYGEAQAVLSNGRRAWRWVAEAPVEAPASSTEAGLIA
Ga0210394_1000004145F084505GGGGGMFPPELERNAFRASNGEFGWTRAQIPSVVDVLRFHRIGILGGELWWVRDGIKDWVGVIPQRLGSPGVYVWETKREPAELWLDFINRSASNTLAMVEQWPMPEDLPPNLPGKILYNLTWVSEAQFNDLGTRPVL
Ga0210394_1000004179F031621AGGAMSVDAKKSMGWTVVLILLGMAALYGGLKWLSLLIPAALVVWYTARPGFRTGRN

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