Scaffold Ga0210394

Basic Information
Taxon OID	3300021420 Open in IMG/M
Scaffold ID	Ga0210394_10000034 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	314677
Total Scaffold Genes	284 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	222 (78.17%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

314677

Total Scaffold Genes

284 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

222 (78.17%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000260	Metagenome / Metatranscriptome	1431	Y
F006713	Metagenome / Metatranscriptome	366	Y
F010566	Metagenome / Metatranscriptome	302	Y
F036941	Metagenome / Metatranscriptome	169	Y
F050508	Metagenome / Metatranscriptome	145	Y
F071614	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000034121	F006713	N/A	VTSILSNAAALWNLILLLAVIAILAGFLYGFVFRRMVRKRRIAGARDRRMLREAAERESERAG
Ga0210394_10000034143	F071614	AGGAG	MFSKKTLFPAALVFVGATAIVAAQNDVVLKSTGTTVWGRHAKMTLVTEPAPSFTTTNINDPGLITIFNNLAAKYPKGEYWCCEGYNVMGPNSGAGEQWMAAAFTPGADHTVTRIAVAVGYSQQGTNGVVLSLNDDNNGAPGAVLKSWNVSGLPRFGTCCTLAVKSDSSGIPVNGGKQYWVVLSTDGSELDTVDGWNVDDADQVDPATVASYTSNKWTVFQAIPGVAFAVQGSN
Ga0210394_1000003420	F050508	AGGAG	MHQEMVPSSLLVSLAHSYEEDPRQFVTLPKPVVDSSLARMAVAEMRNQGYLEEQMRGVVRLTFRGYEFYKS
Ga0210394_10000034220	F000260	AGGGGG	MNWKSKLILGVLTAVAMYLLTFLLPRGGMLRDTALVQFPLTVGVWAIYVLLFVKLK
Ga0210394_10000034274	F036941	GGAGG	VSHPRLRKSLSFVLLLLVIALIAEDVILLRQNHRLKNELPLPSALAVHREEPLHDIGGIGFDGRFHTVGVPTSSADHLLIFTFAPRCPECTLSQPLDVALSAQAKKLGWRTVWISRGNPEETRAFCEGSGVPPEETLVNPPYSTYLRLGLAAVPQIVAVGENGKVDEVWLGRLTDESAKSVAQFLSDHPVQASNSAPAVSR
Ga0210394_1000003446	F010566	GAG	MTIDLKPEQQRVIDLAVKSGAYQNPGEVLDQAFEIIREQLELEDWMTGQRAVVAAHIEKGFRQAERGELMDGDAAIEILRKRRAERLKSQE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210394_10000034

Overview

Ecosystem & Geography

Associated Families

Sequences