NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000032

Scaffold Ga0210394_10000032


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000032 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)328583
Total Scaffold Genes278 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)215 (77.34%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000438Metagenome / Metatranscriptome1143Y
F002848Metagenome / Metatranscriptome526Y
F068332Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_10000032133F068332GGAGVRNPSFLVFSIGLLTAASNAYSRPLPSPTCAELRAQKSKTYGFHLTQLNESQLDAKSKELDAFWKQVQTAGPEGVTCIRTLLAEEKTDHIFQVDASGMLFPADSSPETRNLIRDSLAQADFQESDPANYLTLALALAQAGVDIRPLAAKLLLYPNAVIHISEHALDLDSDTAALFLYGTMSPPEASNALTALLDAPQLFVRSAAAHLLAEQMTDESFRTLSKWTGVSKIEEDFRRNDIQAIMKYQPQNPADYANPKFTREQILQTIASLPHTQKEFDQVMATKGAAFDQQMREKKVAQQQLAQAVADSLPIYGVADHTTFQTAAIANLQPEDFPTIREARRTSLYNVSDESLAEYLAYTRIMIGMLNHLDLFKQDRQH
Ga0210394_10000032174F000438GGAGMDKFEEIGRRLDAELTRLRKYVEDEVAPETEKRTAQFLREVSEKLTEASRKLESRIAARQARNSRQTKS
Ga0210394_10000032266F002848AGGAGMKLCLAVASATLLALPALCVAQNAQPKTTTKKATTKSTTPAVKPADTPPKNLYAELTIGELVAEDANRWSDKMSARIALGGFVTQIAKADDGDTDIRICENPKIEGMDRGRCIVAKCIPKLPCDAPQVGRPITVKGITRYDAKVGTHWWEIQPIEEIEK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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