NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000024

Scaffold Ga0210394_10000024


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000024 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)358674
Total Scaffold Genes260 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)208 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001632Metagenome / Metatranscriptome660Y
F011690Metagenome / Metatranscriptome288Y
F083315Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_10000024225F011690N/AVPISDTSPAAKAIQDAIHGAMTGEQRVLLAFEMSLFARELARAGIQREHPDWPADRVARELLRLAFLPNPLPAGLR
Ga0210394_1000002423F083315GGAGVVMRFEIAVHAQCGRMRSDFSQQPTLDEKPKIVVDRGQRNGWNSTPDRGINAFWRMMSVGSDDRLIDHLTLVRDRQTVLCGQLTELLMGKTHDY
Ga0210394_1000002461F001632AGGAGMFLNHWKLVIPLVLFSSAHAFALDPKDQQAYCAYVMEQAQAQRDLLRTPSAAAGMTQPETGLPLQVVGGASVGLSEIRKAGLTMSVGRRNCEQYQASTAAQQDIQYALPSLEKEALRNRLALIDEASKSLDALMERTSKMVEAQNATRPMLFSLQTTKIKLDADRADTQSKIAALYLPLLSDKPLKELVAEKQSSELNEQRALAKLSRQNNWDVALSVGVHQQVNPVAQGPQPYGAVSVSYNLASRAINKHLDRAAGDYEEWKQVQEGDVVRSMEVLRQQLLDSVSVQEAKLKSLGEESRQIAKNLQQVGDPDTSAAFDFRNQLTAAQLLLEIETSDASFRIDRLREYLAKNY
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