NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000023

Scaffold Ga0210394_10000023


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000023 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)363844
Total Scaffold Genes277 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)242 (87.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000312Metagenome / Metatranscriptome1324Y
F005386Metagenome / Metatranscriptome402Y
F029221Metagenome / Metatranscriptome189Y
F036856Metagenome / Metatranscriptome169Y
F052757Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000002310F036856GGGGGMFVLLFAVSVVVAFGLAFGVSLIFRRMTETVLSRYLAENVSHATAKYLQIAILLAGVTGGARIQLLKDYLNTPAYNLEALNAQMKPALWFLALYNTATDSLLGILWLMMLFAFLATVAVAFIRRSKIRWLLAERQEVRGSWSK
Ga0210394_10000023163F052757GGAGMAIISVPKPSRKSMDPGRDANCLLRAQVEHLHHAERRLPLRYRSSIYIHAIRTEGEAAQYIREVTEAIHKAHRDAADEREKRARTAKGLVKPRAKVKKSGRDK
Ga0210394_10000023275F005386AGGGGGMKSGYLEQLKSDIAARFERDLGKPRAKPAVKPTTKDDTALEQQKQDHFARLLMAEAVRQL
Ga0210394_1000002352F000312AGGMNRSLLIILIPALLVAIGYVVVLRMMGVSPGYLRLVIAMALFFGGIYWLSKRSAKKAKTG
Ga0210394_1000002396F029221GGAGMRRISTLFETILSATLLILGLYLLLEGSSNRSSGEAAILICGAVCSALGVMTLVSAIRSIVWHRHMLRHSSPNHNVNSAVREHNRG
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