Scaffold Ga0210394_10000021

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000021
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 392011
• Total Scaffold Genes: 336
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 282 (83.93%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000131	Metagenome / Metatranscriptome	1986	Y
F003584	Metagenome / Metatranscriptome	478	Y
F012370	Metagenome / Metatranscriptome	281	Y
F020310	Metagenome / Metatranscriptome	224	Y
F030499	Metagenome / Metatranscriptome	185	Y
F039313	Metagenome / Metatranscriptome	164	Y
F048446	Metagenome / Metatranscriptome	148	Y
F104699	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000021151	F012370	GGAG	MHGKMQRGALLMILILTWQAASWAQKGTPAVTDRERERRSFAQNLVKAINAAEADYRKKHDVYANWDTLVGIGDFSSSGTKWAPAEFPTVAHALYGNGAEIVPGWRLRLHLSKGDKAYNLLLEDVTDPKCSYAVFSDERGLIRQGKSIDCAL
Ga0210394_10000021221	F104699	GAGG	VLGGDKEFAGEGGFSGATAEGFFGGEADEIGVVVFLGNVGEDEMTDAGIEAIGVGEEFADRVIRKMAGAGEDALLDDPGIRADLEHVEIVIRFEDEAVGLAEVDSDVIGQIAEIGADRDLGAVGAEGESDGVGGVVGDGERVYIDVADPETLASLDGFDSAEALAESVGQCALKGLQGRLGDVERGFPEAEDLRESVAVVGVFVGDEDGVETLDIAPDGGEAGESFAFSKAGINEDAGSFRFEQG
Ga0210394_10000021301	F048446	GAGG	MLLTDLRLNSLALASLLLLSPSSGAFDTPLSDTAVREAYFLGQRRDDTLPKLLGKYVLHLPAPKTGPYIESVSFFTPYILTALNSSYQVSIYSAQQAQLDHLKTPEVVRIKIQIFLTESYPAYSAVAMGSDSHSPKGIFVRPSDFWRDFRLRTFQKKDVLVVPSSANGQPLFQCSDAGCVLSGATLTFEYPAAAFTEPSATVQIDPPEGDPVVVDFDLTSFR
Ga0210394_10000021305	F000131	AGGAG	LRAQEISLQAVVTPSTVIGKNGEPVKFAIHGFIEFRSLAEVFSYIEAQTQRWKGKINEEERRQLARGLLHEGIESRLVSMMDERPLQTLVTHTSDELREAIAKVKEPLPLAYAEEFAAVREKWKHSLNCWSASPVIAGRVLSNWYPIEEGIQLRGAVYDSTEHFWQAVKYHPDTTLADLTKLIAVLEGRDWGAWLKRLDDDPKIYLANAYAVEFLRYNLQAERLKWFGEELGRHGLKPGDRARSAQQRGEIAFRFSAFEEKSLWGDLADLLHLVYLFSPADDSIRKALAEHHFDGIYLGDRKMGFISEEFRSEMLDIWKVKFLQMPRFREVIAGIPMEIRLEHFLNDGDSPDIPIPVYVGYLNRIRELARERK
Ga0210394_10000021311	F020310	GGA	MPSNSKSKSPATDLAALLPQRLSEALLRERTIPRFVDSYVVEHGRHSLQVHAVLYRDLLNLLQREALLTITAYALEIVTRGMHTEDDRKAKPMTRQETAAFRQKFLTGLTRHQRWNVSDALDFQSDLKMYEDLIARAASSRRPRKPFEAANHPFVDRCGFVLDSSFLEKARLAASRTLKDLETLSARIVEITRGEASPLKPQPPRWRSTS
Ga0210394_1000002153	F030499	GAGG	MEELTIDTAICSDYEKLLKESQRALVNWRERSEEVLRFGLQGKSIGDELQKLQADYATAYHRLEQHGKTCILCQFTIGFAESEPLSSVFISPRRELPA
Ga0210394_1000002180	F003584	AGGAG	MKRTVTFGLLLGALIFLAAFSTPVFAQSNQSGCIAHRPKYIEGVFEVKYDAGCTGHDEPELDPVSSLPGSARELTWTAVLPTDGAFPVSATGPTFWFGGAVTDPKSIFGQSFVELQFYPDAIVSSCSQDGGFQVKFAPNTYTVCSPVWRLTSTGQKGVFHENAAFNAMLTDGTGPNNPMIMHAGDTITVHWFTTPAQDGFHVTVTDLTTNGSGTIVLNSSNSGPLMPAFDTQAIGNALPWGAVNDTPNAFVWEIGHESVFTGAGRFCVAGQVGCDSYDAAAWAGASPIQIKSVTFADGSQAKQFAAVSDLGGKAEVLATCSVYGGPFCIYPWYTLGTNGYQFGVDYPDTLKDFGQANQYQQTLLCGGGFGADSTYCDTVLK
Ga0210394_1000002187	F039313	AGGAG	MWIAKGTLLALWLFGFGTMALLYFSIYRHVPPSTAVDIRVITAPTTQNPFWWAGLVVCLILGLAIAHSWRGPLGLWIALLVTGLIPAGSLALFLVLVYKLKQVSQGHL