Scaffold Ga0210394_10000017

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000017
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 408674
• Total Scaffold Genes: 348
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 272 (78.16%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000872	Metagenome / Metatranscriptome	851	Y
F004018	Metagenome / Metatranscriptome	457	Y
F010557	Metagenome / Metatranscriptome	302	Y
F053507	Metagenome / Metatranscriptome	141	Y
F084569	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000017172	F004018	AGGAG	MTTTTRRAYWGVLAMVFVLVFSRGLFAQSRPAAVSSSPSPVARDLNSTLAELMRAAPATSQDLTSLQQGGRLHWLTFWRGDKAQKAQITAALRRNLQFAVPALIHDAQASGGSISTTFKLYKDLTVVCESLDSLLPPGSHEGKAELTALSNDISDMNRLVEELSSYIQQTAASMESKNAQLVSSAGRSPKRVIVDDNIPEKPSPRKRRPSNQ
Ga0210394_1000001721	F084569	GGAGG	MIPISSAISSGFTWSKISCRNYELKLNHEVVGTLQRPSFWSSNFLAETQHGRWTFRRGGWLGSGAQILDSDSQQPIATLASGWGSGGTLTFADGQTFRLECHGWWRPLWTVIAEGGEALLRLHTREKTVELLTGAAVPDSRLSLLIMFIWYRVLQAEEDAASAAMVAVIAAS
Ga0210394_10000017271	F010557	AGGAG	VNEDSTSLNTALQHYLKSGRQFGDGEKFYLLGFEAALHARNRCKEFDQIASEMTSGLEYLRLQYPTAAVEEPFTRGFQQGREYYQRLCDESDPV
Ga0210394_10000017288	F053507	AGGAG	MKKMNAKLAIRIAILTVGMVGAFFAASFQPISAADGGPIILCPPGQKNCDNGLPKA
Ga0210394_1000001756	F000872	GGAGG	VSKSAAAVLAFAGFILFSIPMSAQDADRHGGFNGLLPNGNVYAGVSYGKLTDQINSQSYHGFEGSFEALPFTRFRHLGLVADGSGFFRKGVTQYVIVGGPRISGNYGRWRPFVHAMAGIRHVNSYSFVYNPIAIDVGGGVDYRLGFKNFSWRLQGDYVHSNYGSAQQNDYHASTGIVWRF