NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000014

Scaffold Ga0210394_10000014


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000014 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)441457
Total Scaffold Genes400 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)288 (72.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000138Metagenome / Metatranscriptome1954Y
F000378Metagenome / Metatranscriptome1211Y
F001818Metagenome / Metatranscriptome630Y
F002814Metagenome / Metatranscriptome528Y
F017683Metagenome / Metatranscriptome239Y
F069199Metagenome124Y
F078314Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0210394_10000014228F000378GGAGGMEDRAPVSQVSQQTSPHSSRNRHFAGRGAWVLTAYGISGLALFGLLAYFFSDFIAH
Ga0210394_10000014312F078314AGGAGMFRTRTLMAFLLVAMVVGLVLTGSGTAWAQNQSDVFWVAYYSGGVTSAGAAAGTDVQIINTGTSGGNLCADVYVFDVHQELKECCHCNITPDGLLTLTMAQLTNNPANGVFSTNGVIKIVSDSGSNCNEVSPVPTPELRSWIVNPQNNGTITESEFEATPLSAQELNDLKVLCSGVPNLSGPGVCARTNPACD
Ga0210394_1000001436F017683AGGAGMNFLKQLFGRGCQHRFSWPRIDSGGHYYQICPDCGTAYEYDWTLMRRTERLLVTAVRHG
Ga0210394_10000014396F002814GAGMKKSRVLALLVVGAHWVDAIGHLFLAAKILPAPNDHVSWLAVILITSGHLVVSVALWKLGDRIAGWTLLIFFLAAMSADLYEHFLHASANNVFMAAFGYWTAWFDASVVVLLALEILGCAIGTRLLGGRTRSRNSAPGVSSNLNRRDLRLSASLS
Ga0210394_1000001457F001818N/AMFRRRKTDQLPGEGGPEDVQKYRRAWRSYVARRNLVVVLFLSFLFLGFMIGKLKLGEPADFAILMAWIGVYLAGGWWLTEWRCPRCGKVFGHRLWTQRCISCDLSKDDVEAVARRK
Ga0210394_1000001465F000138AGGAGMPGQWINSFRISVTTLIAYIPVIATVVTCFFSLILARATLRYVEATDKGLALAREEFEREWTPDLHIKLERVSATEAKVIVTNLAKSSVLLQLLQLRRLSHAMPFERCRLNDPLVGGMTWSQEMGKRILACTDTDFEGPIAASITFYAAGRMFRTDWFRSTIQVRDGRIVSLEPSNMPARRVRVIERKGPERRREFVQDVTGNATPTQAEPRQDEKFFVTGA
Ga0210394_1000001494F069199N/AMPEDGIKKSIQLQEIAPSDLEDVARFISRVSGSKAPLAAAVARLKWILLENPAREPGDPLGWLLRSATGDVVGCMCCAPQKFCLGKSIFRLMMANSFYVDDQYRGSGALIFLKYLQLGDRYPLFVSSANAAVAQLWRKRGGCPLGNSDHEILGILHWPPVVAESVYRKFGSDSVAQVAGALASLAFFAQRRLLPNTATGKLQLLRTPEEAGRVCAEHRSEKITSCRDAAFLKWRYFSGGDPTTRLFAFRQGNVEGERQFMVAVNLLRRGYKQQIRALHVLDIWGETDSKSYLAIAAALRREYRGQVDMLVLRCLDPSLQEALTAHGFKVRPFAAPIAWCVDKSGLLPAKAWYFSPADGDMFL
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