Scaffold Ga0210394_10000013

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000013
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 447184
• Total Scaffold Genes: 454
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 343 (75.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005986	Metagenome / Metatranscriptome	384	Y
F007478	Metagenome / Metatranscriptome	350	Y
F033152	Metagenome	178	Y
F062017	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000013206	F007478	N/A	MIRLPILKDELAFLEKLLPELETRPDLGHVAIEIKARIEKISREIHTLEATVGKSSK
Ga0210394_10000013278	F005986	N/A	MPRCLTISVILLAAVLNCAGEKETVQQLAARAEAARPEDRPGLYVGIAERQLKVVAELFGAGRDEEAVAAVKDVVTYSEKAHDAAIVARNKLKGTEIAMRKMAAKLRDIKRTLSFEDQAPVQAAADRLEALRTDLLSKMFGRGK
Ga0210394_10000013450	F062017	GAG	MKRQVMLYIFQATALFWAFAVCLRTVDLGWNPFAGIGLGMFGALPISFLGIRIHSKHSQRQEQVPAS
Ga0210394_1000001361	F033152	AGGAG	LPSNPSAFKATLTGKSVIVKISLFSRAFSGTIIAVDETGFCFVSEPMIAALRETTGSAMAALEAPSVYLTFASLEWLVSSQPKAAAASA