NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000004

Scaffold Ga0210394_10000004


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000004 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)619449
Total Scaffold Genes550 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)391 (71.09%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000136Metagenome / Metatranscriptome1961Y
F000901Metagenome / Metatranscriptome844Y
F002692Metagenome / Metatranscriptome536Y
F005753Metagenome / Metatranscriptome391Y
F006426Metagenome / Metatranscriptome373Y
F008630Metagenome / Metatranscriptome330Y
F008829Metagenome / Metatranscriptome327Y
F009346Metagenome / Metatranscriptome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_10000004213F008829AGGGGGMRKRIVGLCSISLAGFLMASSAVAQSQQIQHRRRPAVIADAGSSAAPQTQPNYEFFSILNGLPMGLELHHDTQVGTGRAIDVYMFPIELQVMNSDGNLEPVGLIFENFYTAKAMDPITAPNPNNARDCKIWNTMVLFALNNRNPKSRTWPYIEFTVAEGARVIQTNEDGPVWWSDDVECWGSRDRFSPF
Ga0210394_1000000426F009346AGGAGMSFEEALAAASRDEGFKATVYAMNTLLIHKGIYTQDEFQVLFVEWVEKEQRRKAPALQRAGASSAFSA
Ga0210394_10000004369F000901GGAGMATTTAAAYGIYSQDVVLTDIVRNLNQAGFENEDICMMLSPSHPIASMVREASLFATDQEDTDASAGMIGWLSAFGAVLIPSVGFFIRSRVFLHALMVAREAPALCGNARTLVGLGFSEHEATRFEDQLSRLGVLIYVSCDENAKTLWAREVLRHSGAQETSTLEETLMSVTAAA
Ga0210394_1000000437F006426GAGGVVVNSSDPGSNPPPRSATIIAAGLLLAALSLVVLYTERGAFLSPVALVVIAAIGVAALLLQLRLRTDISPSVRVSTRATLWLNALGVLFSVGAVLADVFRPRASVILIASLVAVGCFSISGIIVLKALRKPRI
Ga0210394_10000004421F000136GAGGMKASKLKILYGESNAEAQAATAGAFEQAGHTVEKALGRKAVEAAFSKGTFDLVVLGPTLSRNDRHHLPYAVKKVQAKVSVLVMHADGSRHPYVDACTDTGASVENVLARIEAMKIAGTAPMAAGAAAGR
Ga0210394_10000004432F005753GGAGGVYRNTSFGFSVKVPAGWVLRTEEMNVADASTATESRAALDRTAPSASLRASLGGCPHLGACGRVLLAAFSRPPEAKAEDVNGSILIVAESVAAYPELREAAQYFQPVMEVAKAQGFEMDDEPYEFVLGPKKLVRGDFQKDVGTRVMRQSTLVVLTREYVVSFTFIGGTEDEVEELVQGLSFGAGSKATR
Ga0210394_10000004524F008630GGAGMPHKMTSSHIETQRPPSPDDLKRLFESAVCEIHQADVTSGKKLQYRAPIVSRARMLGLSQAGAEKRALSDAARALAQLWKV
Ga0210394_10000004546F002692GAGGVSFMSRLAMSLIAYLVLGVLAFATLSDSRIRLVTLLILAMFALKSWVRRKDVMHPDGESKSE
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