Scaffold Ga0210394_10000003

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000003
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 695562
• Total Scaffold Genes: 641
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 486 (75.82%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F002363	Metagenome / Metatranscriptome	567	Y
F003137	Metagenome / Metatranscriptome	505	Y
F003240	Metagenome / Metatranscriptome	498	Y
F006705	Metagenome / Metatranscriptome	366	Y
F017174	Metagenome / Metatranscriptome	242	Y
F051882	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000003233	F006705	N/A	MPYILEHLTSLRQEITDLRNMNQRSALKTADSQIDQSAVEMRANRLAEIKKELSQMLNRPEDPQVWWEKGGRRNRVA
Ga0210394_10000003281	F003240	N/A	VLTEEDKQWISDRLEKVETTLLSEFHKWASPVELRQRSHAAAIRALDTEVEALSDRLKNIEGR
Ga0210394_10000003296	F000036	N/A	MGMDYKETFWMACDSTEQLRAEYGPFHTRVEAEAEARRLGFSYLLRYEHMLDENEEIQEVRCIFLELPGTVTAEVALISLHTRCATCGVSATHDKAWQAEVWADIHEFENSRHRVRLFEHARGKGLKEIAGWRG
Ga0210394_10000003432	F017174	AGGAG	MYSWENPDDRVAIVTLNSELRHAQLELLSAHSAAHQLRVRFSAEDLARFGQRDILRKSVHAALALSEYYSSIERKIPAAEAASEAPTRLSEDRILEAIDLVCSFLREQRERYFHSAAPLTQHQKALIGGYFSPDMLERVQIVKLDGSRVPNPPFYEQARALGFTSLPEITHMHSLTFLDVIVFNEAVTERTLFHGLVHAVQFELLGLARYSSLFVRSFVNTRLHFSVPLEAHAFSLESKFVGTPAHLFSVEDQVRLWMKQGRY
Ga0210394_10000003499	F051882	GGAGG	MKSSILAVLAFAMICTAGAIAQYGQDQHDQQAQSSHRVKNTNVTGYVRKDGDNYVVEDDKDKQRYRVQNSEAVREHEGHHVKIKAKLHEDDRSLEVNRVNRLREDGHHQ
Ga0210394_10000003557	F002363	GGA	MNILGLCLVVQLSLAFGVAGLFWPQKIMPFFDVLMFPWAASHRSVRANSIAALGLSALLLARLLAIMR
Ga0210394_10000003570	F003137	N/A	MAQKKKIKRFEAVQAVKELARERVGAPPVEKVVPHKNKKADKHRATLGRLLGERETE