NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000002

Scaffold Ga0210394_10000002


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000002 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)774925
Total Scaffold Genes713 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)574 (80.50%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Associated Families17

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000549Metagenome / Metatranscriptome1036Y
F001500Metagenome / Metatranscriptome682Y
F001909Metagenome / Metatranscriptome619Y
F011499Metagenome / Metatranscriptome290Y
F016298Metagenome / Metatranscriptome248Y
F017859Metagenome / Metatranscriptome238Y
F022064Metagenome / Metatranscriptome216Y
F024185Metagenome / Metatranscriptome207Y
F025223Metagenome / Metatranscriptome202Y
F028009Metagenome / Metatranscriptome193Y
F031369Metagenome / Metatranscriptome182Y
F035029Metagenome / Metatranscriptome173Y
F036356Metagenome / Metatranscriptome170Y
F044182Metagenome / Metatranscriptome155Y
F046237Metagenome / Metatranscriptome151Y
F051723Metagenome / Metatranscriptome143Y
F053821Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_10000002133F011499N/AMTPASSLELTHFQAFFLFAVVISVAFGFLGRRRPQDRVKYILWSLFLFLLVGIGVGWAMFPFSR
Ga0210394_10000002222F035029GAGMAIRFLSSRSMISPRVEVYGRMLLGLAVVSFAGCHGNAHPEDPQLKPIQAMLEQQLPPRTPEEKVVLFLDNHGYPILAAQKHGTIVANIRRTDTQAMQPVIARVTFYFDANRKLNTFELERPESEPSRR
Ga0210394_10000002231F036356AGGAGGMTGRSAGISVRNFGSYFLSALMLVLLFANSSAAQAKAPQTAGVDNTKMGPYRALATLAFNASQKGDNVTAATLAKILERTWDKSEDYGGDTALSKTNKKLFDEVDKAMDQYVGLLVDHPASAPDPARLRAAYTNYLEKLKEAD
Ga0210394_10000002232F016298GGAGVSDAELGLMTERVGYAWKNFEDQQATIRAADLKAGYLVTFLLFFGASTIPLGKEVLPALRWVNAGEIAASALYAASYLVFALGFVRALYLISHVLTPRIARHHARPADGRELLYYEHVVRYDNSAAYFEAMARVSPEEMLRNVTDQVYELAMICKAKVDSLRAFSQAFKITLVAWFISTGVGFWIMTWMK
Ga0210394_10000002245F025223GGAGGMLILAKVALGLGATMAMAGVYVFHEGVIRVDLDEHREGGGHVHFWLPATAVAVGMHFVPKDQLNHTTEQVRPFLPALREVAKELEKYPNMELVDVTDARDHVRVAMVEGKLRIDAVSGDGDVVHVSVPARVLRDVADELEEKAPGV
Ga0210394_10000002248F031369AGGMEKDEELRQERQALRLLCSNLVRAATRVELCNLLDSSLFQDTLHRVAFEEIRAAGAVPAKRLREELPGRITNRGFPDFELLEFLGKDLASEGEIEQLFMSVLRLIQVRHESDGNEVEN
Ga0210394_10000002271F028009GGAGGMYRLESDNLKTLLAGEGQLLEMISAGAPLPQILDRVCSALDMQVGNVVSLVLFPDDEEHTLHNIAHSAAEFGLTAFSCTPILSEDAKFFGTLEMYCCVSRVPTRGECELIDRAAHLAALVIQHHNHELEAEDWSLDLNGATRRSPCEGPPSSN
Ga0210394_10000002379F024185AGGMQTVYYSLMRKLLAVVVVMFLGILLGRVAAGQQSRPLRTSILDAHEGVTIGVEPWTQASRYKEKFPKKTPFAAGIVGLRLTIRNDNDEAVKLNLKRIRLLVMLDPENKQELEALTADDVADAVMLRQNGKDPTARRLPIPLPISRPKPTRDKNWEEFQATCQNAGMPSSVIGAHSTMEGLVYFDLRGEWDLLQTARLYVPDLQRMTSQQAILYFDIDFSRNPSN
Ga0210394_10000002408F000549GAGGMQPQWQKRVARAYRIEGSIVLYRSAARRQFKAERSQVRAEPWWGIFLGVPLFLQTLLRLIIACPHRHRGPPITLRGSIPSDHGGRSDYGRGTYITCLDCGQKFAYNHKTRQLVDFWGIHDAEARAGVRRKVAEFFSPLRGLAARIGRLNMRVPMNELARSMHRLGILMKGH
Ga0210394_10000002425F022064GGAGGMKKELKLIWAGMASLILVAAVCAIPPTLPHSTVTLEQTAAPTQSVSGQIAEVQKTSFTLNVGPSHTMSNVRQQLQETQQKSMTFQIDKNTTIDGKMQVGANAEVTYREDGGKLVAISVRV
Ga0210394_10000002472F051723GGAGGMSLSVMQLMFGAALVLASSPVLANEKPASSAVAPLPPAYVNCPGISNVPMTSDAEQALPLRQIATLSCGQQVSVLADYEGYTAHIRTSDGREGYVAHMYLTTATPAVQPELEFDSPAPVSNAVPVSGIVRWTAGARGCDQLTSRGRKVESATANGLTVQVALQDTGWKLHASVAVSNGSDSQVFVLPRLVTLDELTPSLRNLREENPAKLARSEVNHQLMRTESNAVPPPSAIVLRSRSAAQVSGVTYRGSSVDDYLGFNDESASVRAVALKAAKLAPGEKTAGELWFTRDPRAHELSLRISVGDLVYDFPFSFE
Ga0210394_10000002477F001500N/AMSDPDPLAGIVPRRALPRIDGETAITEHIERIEGEVALDSYVKAQTSAPEVAKRINELENCLQRLANAALALSDVGRHAELRTAAEEAKLVLKNRLEVDDTKHRFHSELGAFKDDLRIIK
Ga0210394_10000002518F017859AGGAGMNRTQTESRAMDTSVAELALRELQDRIEASGLESSYSELVCDLCVGQVSLEKAFGEIHQKAMEQMVGLLDTRILGDEIALAACLEKIAQESERVAWNALEQGTEALREGLAILEGAETLGDGGYVN
Ga0210394_10000002667F053821GGAGVPPLLRAPVHHPTQQQLPVIPQLSGKVRCGDSGETGDSRTTPAPITPTSSHSTSQSTNSYLPLLRVFCALSVICVNLFFLLSPAQAQNLDKPLTNIDEEVTAFAYAPNGNIVFSVRRMFKAKKYDLQRDDIWLLESGGKRKRLLEGQKFTRDEKLFTYQVESFTWSPNGHIIAVQLFTTTMDPDAGAREDAQALLLLDDSGRELHPSGKDPLIMQAQSPLWLRDNQTFVYLTNEDTPQDLFAMQYLNVSSGPAGKAFEGRTFQGASRVSGSNAAIAVERSRSFDGPARLQRLDLLAQDDREVATLDAYSGGILVSPSGTRVAYFLDKEVLEIRDLTAPVRIARLRIGLGVLQWSADESRLYLKRTIEKKSADLVTFQVPELRAYPAHSEIPVLEPEPRMLLHGLTVREYSLSPDGRFLAVVLPGKRNLQIFGF
Ga0210394_10000002679F044182AGGAGMSNAGSQVLFLGELPFWLKISQSIVEAPSSSFQICRAHSLTDALRRLHAEPWHAVLLDLSHPSAQEFLAARKLHDQLDSVPVVALLPIVDPQFQQAALAAGSASSLVLADVNVASLQHALVTAINTETLRNSSRKVSPMLFPFEQAPVDGRPVSKVDAISHAVNNLLCVINANADILFDQLDSTHNATRSITQIKKATKSAADLMRLLRTP
Ga0210394_10000002683F046237GGAGGMETKLLCVLLIAAALTLAPPASFAPSAFPKTASCPMDGGTAHATGKTRKGMQAACTDVEYKHKGTDYSDPRHPQKFNHLFWITHCTE
Ga0210394_10000002690F001909N/AMPRLGTEERRRKGRLKLSRVVRVRPSEPGLTEFDEILPTQNAAQDSVYFVSRNKKYKAGLRVFVTYPYSETPGSINQESLGKVVRIDELDHGRRGIAVQILMPLYLGAKETLR
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