NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000001

Scaffold Ga0210394_10000001


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000001 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)838508
Total Scaffold Genes716 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)491 (68.58%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Associated Families16

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000309Metagenome / Metatranscriptome1327Y
F000534Metagenome / Metatranscriptome1044Y
F000838Metagenome / Metatranscriptome866Y
F001102Metagenome / Metatranscriptome777Y
F001318Metagenome / Metatranscriptome724Y
F006325Metagenome / Metatranscriptome376Y
F007325Metagenome / Metatranscriptome353Y
F012141Metagenome / Metatranscriptome283Y
F022698Metagenome / Metatranscriptome213Y
F025556Metagenome / Metatranscriptome201Y
F029213Metagenome / Metatranscriptome189Y
F036816Metagenome / Metatranscriptome169Y
F047844Metagenome / Metatranscriptome149Y
F062021Metagenome / Metatranscriptome131Y
F087522Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_10000001112F025556GGAMEVRAVTEGTAVGWYKVTMTSREYKAKGKDLEDSFETQFEQHGSLEGAALFVRKDEKAATWEYYLTPEAVAFSQSLLKEFVWGQEYAWGQPCAAPAATVRNLSFCKGSTGNKYAHLMEPS
Ga0210394_10000001140F007325AGGMLGVRYLLRWGTITVFAMIAVLSARAAPSGEPTVEELKGRVASASIGDRAHLCVQIAQKQLVEADKQYAASEVEKGQVALTDVVAYSELARDYSIQSRKHEKQTEIAARTMIRKLTDLVHSLAHDDQAPVRDAINRLERVRDDLLKAMFPKGAK
Ga0210394_10000001294F036816N/AMLLIVPVSLLGQTGLGQTGASQTASGQAGQGQTGAAVLRTQGGVWVNGYEAQDYSAVFPGDLLETKVGSQATLNMEGSTVLIQPEAVAKLQNNLLELDHGSVSVGTSKSFKVRVNCITVVPVLNEWTQYDVTNLNRTIQVAARKNDVNVERELDHRTPSPQTEASRGSTVHEAEQKGFDESEICGPPARPAGAGTSINPKWIAVGAAGVGVLVCVLLCRGTPTKPPISPSAP
Ga0210394_10000001415F029213GAGGMDNRRWLWIGATLLVAGVIFWAVGQAVNPSSGDMEFKKTLESIKQVKSFRGTYIESASGAQHSERLWEVDCNQVIVHQQSHDSQANTDSPFDMKEDELLVGEQRYSRTSDGAWENNGYAGERGSAKWYCDNLARGTVRDLLPDMYTLVSHAITEEGDKKTVNGVRCREWKFAVRTATIAEDGSMCIGLDDHLPYEMTMKGAGHYSYSDYNRPIQFDVPEAVLQPASSTGGSN
Ga0210394_10000001425F006325AGGAGGMTNPTIDPATYTDEELRGALARVLALARSEGLDDAEVQKFWQIYSEMVRRRAATGNAA
Ga0210394_10000001454F022698GAGMNDGQTPDNAGSGGLVSKSPGEANLHVLDVVRRAEQELRQLIDERGEVTKRIGTVKRTIVSLAKLFGDGMLDRDLLSLFDGRGGRQPGITSSCRRVLAEARRPMSAHEVCDEIQRTLPALLARHQDPMATINTILGRLVQYGEATVRPGDRGQRVWVWVAERESRASNALEGENSRPAI
Ga0210394_10000001547F000042N/AMHRYSPTKWSIVTSSIQHDVGILEYMANIKFVVKVTHGGTRAPAYVQRIDRIPVQMTTDRKLALMMGKFTAEDAAKSLQNSRCTPELVPVEITA
Ga0210394_10000001548F000309GAGMTHNGTQSLDQVLESAIVVSWADLMHGTEAGLIHIEYGFAPGGTLDYLKVWSSISRGHWLLACEYWMSPSTFHDTGIRFDNGYQSEGLAHILGFVMQHQDAFILPSNLGRQGLLQIPTPTAEESTAAAASVNHAFDRLGSALAPALA
Ga0210394_10000001573F001102GGAGGMAPGTKKQINIARLKADLAAASVELLSAHCAADRVRLQYSPQDIIAFGERRALERAITSAEALHRFFSQIGAQINHEEGANR
Ga0210394_10000001603F000838N/AMAGRAIRITSRIVFFVCGSLSLLTGAPYAMLRGAELPVQSEWVIFVVVLALLGVFSVAVAVLPRSWIARACKKDRDDERLFSAPLKLLGGFAATFYLVALVAYLAPRRWNLDPQLMFSLCPMYFLKRAFDPPLATILTILAPMNAAVYGSLGLTLGYAWSAFGKRTFS
Ga0210394_10000001607F012141GGAGMSGERYWVWIVVRLAVGVAIVAWAASYLTAGSGEKEFQKTLEAMKQVHTFRVAFAATPRDQHNEMLWEVDCNRNLLHYRWRVYKTGSDTNEMSRDEVHVATEEYDRQSDGSWSKARFLARGDRPASWYCGALAQGNDNGLMPQIATMIKRGVLQKGDKKTVSGVPCREWLVTMKGGTSGLEHDTVCLGLDDHLPYEMTVDWQQSRSTFSDYNAAISFDMPEAAAPMTSETTPSN
Ga0210394_10000001608F047844N/AMRSLFSIREALAAAACVICLGAALIAQDSDSPNSLGDVARQTRAQHATAPAEKSGKAQDLVDEMQQEQEAADNAPTGFKNYNAGDYRLFVPFPYSLEGRDDGGAVLLGSRLGVTNTEVMAGTPIPIPPNLDDNDLLNAARQLASMHGQPGNCYAIKQSSRKKYRCSWQNSPVLLGHQVFGSMEVIVGSNSLIPVMCVSPDDVHQPCVVYDTWGNNTCSDRERQLYGWDHRKAQAAADASYKDERTSAQMCEEIIYPSIQLKEDIVVHPASISESKAPKSAVETTPLREHAAGEPESQQSQSPSLAELARQTRQAPHEKAQAKLDNAEGMSVAPAGYQSFILVYCLNPQQCAEASVVIPEKAEVVSRVNGQYIFKASLNGDPVMLYAGPADVNAPYRSLTDPDYIRMRDLANANGWSREKAESASTQELTIEDRRALMTRFRYQRDQKRWWIGERVLIANQGSEFLVGCAAPEEHFADAEVLCTTLVHSLRLP
Ga0210394_10000001610F087522GAGMRRLYSIFVTGLALAFCAGPAAVRVHAQARANEHKVLLRADVKAGEVLRYELEAAGSFLPIADASGAILSPPRGPCDYALASIVTLRPQAPDKDGNTPVEARYSETRVTSVRCALFSAADFQKRLAALQSSEIMFRVGPHGETDLSHARDGYFKYWDGGDLLRKVTQDLLQTEFSPQPVAAGAAWKPRGQFAYSRDHALKDLELSGADLRFRNLVHVDGKSCAWVTSQYIFSPVDLPAVGTASVGRTVPAAGNNAVAAVLRISLLLDPATHHVAWLHRSQTIDNKLTLASPYDDSDPVDPPEPDSQDSENPMPDLSSMRSDNPGRYPFMTFHFQEEARARLLPDQRSVEWLAALKRFEATPEPESGTTPIAVTKTLLPNPMILAAKPAVVKRATRLVVDSDSLVATPAGFTRYEKGLCRDAWFCATVSLALPGDVQVSEDTPLRTVYLAQTDDLLLSITVGPALDRRPRGLTEDEELKKQANYYLENYVWMAAKPGIGTNFSSATLDGYPGLITDFSATQRDLADIRGVLALMLTPWGKVVPVSCSSDHAPSAELQSLCEKVITSVSLRR
Ga0210394_10000001646F062021GAGGMLPFILYFITGVATGFHVYTLLFAAYGASLNPLELVSLLGSFCLVIAAYLSLFRPQVAGRVALIACLLMCCFYGPAIANLVRARLHKPVAASQLMLPLAGETPKTMLLAESARF
Ga0210394_1000000185F000534AGGAMPQEISVSYQAIKSKVYRLIDSLVVGEKSESEVQESIRRWWALIHPADRPIAQKYLLMVLGRSASALDSMGDAFLSLSSCEVIRPQIADAALPAKRMRLLERMVKETSVRTAV
Ga0210394_1000000188F001318GGAGGMKRWAWLLAVPVLISFAGAQVAASLNSQANAAQASSSQDAGYDTNSGDRMFFPHDMLWGWAQFDLAPPHNEIDPNLCAGNAGQYGGVNAPCSLFARYMLSGILEFRPFGRGPLRRFMVYGAPTFLFGKTIPKTLYTWSPDAIGIEHSWGVGIYLNKGFEFRVTQHFLFDRLGARNTYLGPADLGNNGPWGRFMTVGVRKTFGTRRW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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