Scaffold Ga0193695_1015532

Overview

Basic Information

• Taxon OID: 3300021418
• Scaffold ID: Ga0193695_1015532
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1562
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9137
  • Long. (^o): -106.8949
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F000805	Metagenome / Metatranscriptome	883	Y
F001079	Metagenome / Metatranscriptome	785	Y
F021376	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193695_10155321	F021376	AGGCGG	LYVKHLTSLQFLTYVGFFAVVLAAMFRFVPGKTPPTRDEPYPEDELGAHDRKTAKYFVAGGFFLVLGSLHMVLKNLP
Ga0193695_10155322	F000280	GGAG	MAEREPERGVGPARPLVGYRDVGEDIRHSRRSMIRAWVILAALMIIYLGWTLTVFFLEPGLR
Ga0193695_10155323	F001079	AGAAG	MEAAETPVQSVLPYVSWSSLTIAAVPADAWPGVFGSMQALKGHVQEYPGCQKLEAFVHAEAEGAVRIHCYTTWDTPEQLEAFLERGYTFERMLVDVAGIAAQPTLVMEKIF
Ga0193695_10155324	F000805	AGGAGG	MGMPRGDSPAKAHEYYEYLQSHSQTMQAPATWHVHWLDLAWLWGFLLALVLIILWWLGQYRSTRQRIYPADQFGGYTTEAAGPATRFFLLFTVLVTGWAVVLIVGHLVWGQKF