Scaffold Ga0193695

Basic Information
Taxon OID	3300021418 Open in IMG/M
Scaffold ID	Ga0193695_1000004 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021418 Open in IMG/M

Scaffold ID

Ga0193695_1000004 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	201070
Total Scaffold Genes	206 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	136 (66.02%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

201070

Total Scaffold Genes

206 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

136 (66.02%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9137	Long. (^o)	-106.8949	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9137

Long. (^o)

-106.8949

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007043	Metagenome / Metatranscriptome	359	Y
F010704	Metagenome / Metatranscriptome	300	Y
F016395	Metagenome / Metatranscriptome	247	Y
F022970	Metagenome / Metatranscriptome	212	Y
F033019	Metagenome / Metatranscriptome	178	Y
F051249	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193695_1000004165	F016395	GGA	VETERAILEGLERIDGLRRGDAAAGLLLEAVRSLLSDAEEWVREDPAAPPRAIEAIERSREALATGESRSKTALALP
Ga0193695_1000004185	F007043	N/A	MSTLRPIRFRRRRTSPTVESLSDQLGALTRERQGLRARDAGSVDLEQNRVAIARAQWELSYALIERHLPKPSAAQSAA
Ga0193695_1000004196	F022970	AGGGGG	MRIEVDPDAQEELLEFLRRADCEARADGDGAVIVEVPDAADDQARLEVDLYLKAWEASHPDVEAHLLMTPQSGVEGEAETSD
Ga0193695_1000004197	F010704	GAG	MRRLLLVLTVAGIALLAVQPAVATIRPQYGMSHVVLGMTKAQVRARLGAPIGSGGGRFYYPRVWVGFRLGRVVEVTTIRSTERTASGIGVASSEAAVRATYRSVVCAPFGGFRRCRLGSGKPGTRATDFLLGHGRVVQVSVLLLPG
Ga0193695_100000439	F033019	AGG	VEKRGKPTVRQVYALAAALCERMGEEFPESRGDASELIERLRIENGHPAPSLEDVRERR
Ga0193695_100000444	F051249	AGGAG	MTDRSDEIDGEQVPPLSGETTERVAVVARLRPGSRDEAVQIIAEGAPYDLGDAGFRRHSVFLAEEAVIFVFEGSGIQDLVRALVDDPTRSAAFSVWGPLLEGTPALAREEFYWEAGRPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193695_1000004

Overview

Ecosystem & Geography

Associated Families

Sequences