Scaffold Ga0193695

Basic Information
Taxon OID	3300021418 Open in IMG/M
Scaffold ID	Ga0193695_1000002 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021418 Open in IMG/M

Scaffold ID

Ga0193695_1000002 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	518577
Total Scaffold Genes	541 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	356 (65.80%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

518577

Total Scaffold Genes

541 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

356 (65.80%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9137	Long. (^o)	-106.8949	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9137

Long. (^o)

-106.8949

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F002111	Metagenome / Metatranscriptome	592	Y
F009695	Metagenome / Metatranscriptome	314	Y
F014570	Metagenome / Metatranscriptome	262	Y
F031950	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193695_1000002114	F009695	GGAG	MQAKRARWQLLAAATVFLTLAFLAVPTTALADRGNAQPTLSFFSGGHGGHADWLATIDQPPGDTDNQAIRLETTNGAPTYEHGYAGILVHHVTGIPAADFPDSSFWNKTPYPYLFQPYTQGSPRLVVAFQNPAGEFDGYADLRQVVRGNDWEEVSDQTDYPNSAWDVMNTPRGAPCYPFRYSLTWDEVQSCFAGDTTLAVYLPADPYGIYHLIDDVTVNGKTFSSASDNSNGNNDPAGPAATTDPSLLPPLFLLPPL
Ga0193695_1000002124	F002111	AGG	MAAAVLPFVTYSSLTEVVIPEDRWEDLYASLQALKAHVQEYPGCERFDVFIRAEDRGDVRVHCYTTWDTPWQLEAFLERGYTFERMLADFGGLGAERSLVMHKVF
Ga0193695_1000002125	F000280	AGG	MARSRRPARPLLGYRDVGEDVRHGRRAVNKAWVILAIMVLIYLVWTLTVYFVEPGLR
Ga0193695_1000002218	F031950	GAGG	MNPAVSLWRLIHEDRLFRWATYASVVLIWFALAWADVRLLFGLPLIAAVLWWLRRQRERRGWLVEREIDVDLL
Ga0193695_1000002266	F014570	GAGG	MTDEIRLTIPRDRALYGVAHLVMSGVGIRLNLTIEHLEDLELALDAILERAEHSEEVTIALRVKDGELETAIGPLRDGVRAELEATAGEDVGLRRILDTLVDRVDIGPGDGGEWVTLTKAVKEQGG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193695_1000002

Overview

Ecosystem & Geography

Associated Families

Sequences