Scaffold Ga0193695_1000001

Overview

Basic Information

• Taxon OID: 3300021418
• Scaffold ID: Ga0193695_1000001
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 665428
• Total Scaffold Genes: 684
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 454 (66.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9137
  • Long. (^o): -106.8949
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014806	Metagenome / Metatranscriptome	260	Y
F020394	Metagenome / Metatranscriptome	224	Y
F020629	Metagenome / Metatranscriptome	223	Y
F045738	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193695_1000001492	F014806	GAG	MGHVLAAAFVLADAATEGKKVITGMLIAGLVLAAGPILGETYMYFKYHRRGRSPH
Ga0193695_1000001509	F020629	N/A	VQWLAVMVTVLVVGTIIGLIWADTSNIAGSIAVVTNIVGGAGTAFFLIALAVVTRRQRRA
Ga0193695_1000001665	F045738	GGAGG	VTFYERFEKLSATDMSTSTSTRRRLLERAGKASLGVAFVLAGLSRSGKAGAATKGAGCCSLAYQNQCPNCNGHGYDCAGGCTRWAWYCVDGSHRVWICGECYSGGGCQGCSCGAVALTQTSRPILRP
Ga0193695_1000001667	F020394	N/A	VVVGDLASPEEPICVVTRIIFGRWSSLAGAFLRFRRLRRIGRRTIPGLIDVHVRIGRNATLTIISLWQDELSLLQFTTLEPHVQAVRWTIDKQGEIWSGVFRLAGTSSMSKPWIGTIRHWEPLGMSSAESVAVDEP