Scaffold Ga0193694_1000005

Overview

Basic Information

• Taxon OID: 3300021415
• Scaffold ID: Ga0193694_1000005
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 238039
• Total Scaffold Genes: 209
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (21.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9137
  • Long. (^o): -106.8949
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008428	Metagenome / Metatranscriptome	333	Y
F010579	Metagenome	302	Y
F073705	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193694_100000514	F010579	N/A	MKHYKIIKIFLLIVVNTIVILEGTHAEHMPIVKSKPVEGSEKDVFPDLLFFASYLYQ
Ga0193694_1000005185	F073705	N/A	MKTPIRDLAFAAFSLLIIVIVLCSFAPAKRNSVANGSGMAGSISFSFNAVEQKDGVVIGSIQYGEETYSINGASWFGKSAILFTDDGHAFFVSDNGKGSVNDWISDPITAEKSPYISTSDFFGIHGVSTGNIQVKE
Ga0193694_1000005206	F008428	N/A	MFSSFMKTSDPKTEMVCGIWKGYFGTESETNSITIKINPQNKAEIFCNFKEACLNTKGTYKLIGDSAIVISCILTEKNSSEVVLYGNLNRTTSFIDGQWDGEGKQGGCFYLQKQSAQTNL