Scaffold Ga0193694

Basic Information
Taxon OID	3300021415 Open in IMG/M
Scaffold ID	Ga0193694_1000003 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021415 Open in IMG/M

Scaffold ID

Ga0193694_1000003 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	660188
Total Scaffold Genes	546 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	84 (15.38%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

660188

Total Scaffold Genes

546 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

84 (15.38%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9137	Long. (^o)	-106.8949	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9137

Long. (^o)

-106.8949

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005710	Metagenome	392	Y
F005797	Metagenome / Metatranscriptome	390	Y
F005800	Metagenome / Metatranscriptome	390	Y
F016611	Metagenome / Metatranscriptome	246	Y
F032328	Metagenome	180	Y
F081018	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193694_1000003110	F032328	N/A	MKLFILIQASLLLLAGQCFSQTDSFDVFTYRSPEFFTKSELPSRLQFTMSNADGNFCTITLYKSEHTKEDVMKNVTSQWNEQVVKRLTKASKKPGKIMTGQLWDGWTSTLAIGNFYHNKKKSVVILNSFGKDQTSACITFTFTDPLFKGVVETFSQNLHLKN
Ga0193694_1000003202	F005797	N/A	MKGIPITTVETNTRLAESLIEEHINNMHHAEKNFGKKGQLNGGVLWENFESFSWCCEHSPVKGTIEIGYLDNGNSNVKHISIPVETNFGVVCTKEKENNYKITWSYSLS
Ga0193694_1000003330	F005710	N/A	MKLLLKNPSTMKSQGQPNFYFSAYPLKVIKEQESEKKSYLHIYTNPKSKKKYAEGLKILPMVNPYSKKDEVRLLQNLNKQNQPDNVEERDSDWFASYE
Ga0193694_100000349	F081018	N/A	MKSAIVLLLIVAFMVLSYFLNQWLQKIIRPKQSLGRLLFYFLAVLISVFAISFFMVFVIGKLYPTELIK
Ga0193694_100000387	F005800	GAG	MENDYKLMFIKNKLEQIKSAVMYSTNSNTVRLPNDIVEFESVDDDGLLWFSAHGPRNWEKAYELHFPTKLIFYRKGCEYYVEITGTAVVVNKQDVMYGTNGGKLLLKMVPYYIEYTETGRREAGFKKLKGQMYDVFMNTLGLSRASQPRLTESQY
Ga0193694_100000394	F016611	N/A	MGNKKNPPPDKSINKEAEQEPRISPSTGQHQPDIQNEKSKRKRGNMPGKRDDIDPEKIPNGNPEEYNDGDPVEEKSPRVSNSL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193694_1000003

Overview

Ecosystem & Geography

Associated Families

Sequences