Scaffold Ga0193750_1005584

Overview

Basic Information

• Taxon OID: 3300021413
• Scaffold ID: Ga0193750_1005584
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3289
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8924
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007729	Metagenome / Metatranscriptome	346	Y
F015237	Metagenome	256	Y
F057633	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193750_10055843	F057633	AGGAGG	MMKTFLLLAVSSVITAGVLPSLPAKIILSAFVLLAVVSEAARRLSG
Ga0193750_10055845	F015237	AGGAGG	MMKTFLLLAVSSVATAGALPSLPAKIILSASVLIAVLTQAARRAPVGYQDEDGFHSVTR
Ga0193750_10055846	F007729	AGGAGG	MKTFLLLAVSSVVAAGVLPALPAKIILSAFVLIAALTQAARRAPVGYQDENGFHLISTRRHGTRGQALRRAGRKMLMSWLFPDSRRPAKA