Scaffold Ga0193750

Basic Information
Taxon OID	3300021413 Open in IMG/M
Scaffold ID	Ga0193750_1000036 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021413 Open in IMG/M

Scaffold ID

Ga0193750_1000036 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	73340
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (42.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

73340

Total Scaffold Genes

75 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (42.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8924	Long. (^o)	-106.9111	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.8924

Long. (^o)

-106.9111

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000318	Metagenome / Metatranscriptome	1309	Y
F000411	Metagenome / Metatranscriptome	1170	Y
F000810	Metagenome / Metatranscriptome	882	Y
F008758	Metagenome / Metatranscriptome	328	Y
F026839	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193750_100003619	F000411	GAG	LSLERILGNLLLVNVRALQIFLLLTTAFFLPATLVRGELSTGTTHSISFVDLDGNKLSTADGHVTIVVLTTSADREQARIVGDHVPDFCLGNPAYKMITVIHFTRSHMAMGRRMATAFIRHRVGEAAKRLQARYDAQKISRDAKSDIFVVTDFDGTIASQLGQSAEATDFCVFVFGQTGELLAQWHSVPSADELAAALKKSD
Ga0193750_10000364	F000318	N/A	MMPAQVTSGEQNPQFADAAALQKKAIQAQARIHANKDDRDQLMIAVKTNEVAMAKQVLLRNGFTAEDLENAKITLRTGGGKGGADELEISATCCDPKEITIQRSLEYFTK
Ga0193750_100003657	F000810	AGG	MDPKKTRFARFGMLLRASAATCWRKRSLIATLSAMKSKHSFARNVLLMLVFGCAIFISTIARGGPPPRYLRSNHHFPPGLLTVDRTPNFGWNLGFNLLIDGRSVGSVAQGHSYSTWLPAGPHVLTVQRVPATGFTAPTSTTVNIQPGAEHLYTAMWDSDLVYLQPGGVWLTPGAYWQNHGDGAP
Ga0193750_100003661	F026839	AGGA	MKIILMLILGLMLAGCESTENHVRNRDAVDRNRYLVEHNAVDTICACP
Ga0193750_100003662	F008758	N/A	MRKAILLAGCGLLLGSTVIAGDFAADPLSFRNPQQDLFVNLSEMLRETKELQSCEKQQEAALRRFLEAGLSLNAATLMAHNQYPCD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193750_1000036

Overview

Ecosystem & Geography

Associated Families

Sequences