Scaffold Ga0193750_1000020

Overview

Basic Information

• Taxon OID: 3300021413
• Scaffold ID: Ga0193750_1000020
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107875
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8924
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009544	Metagenome / Metatranscriptome	316	Y
F013624	Metagenome	269	Y
F028266	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193750_100002017	F013624	AGG	MQTIIALLFCLVLGVTAMAQGWFAVLWVSLGFVIGLFVTARIALPILLGLPRAMRLVGSGEMRAAVYRRLLFTPVLWIVQLAMLVFLVGFFWPSAAAWFQSNDELITGLRFGVIGILLSALSKTSRADFHANFDQSYAQFYVRSTSRRRRRVAIY
Ga0193750_100002023	F009544	AGCAGG	VILRSLPATALIVVGLLSIGSPNWDASASAPSPSPSERPKLAPFKERLAAAQSVKVQTAILGIELDSTLESAHSKLDSLGQPSARPLDRADEAAGRTEDEYKVSWQLAKTDYGSVFVKADGKERITYIAAYLRPGKEMPFEKIGQLEKAPVLTDRVVAWDVVRPNRPLIRVVARGSERKANSITMFIVKRPRAD
Ga0193750_100002081	F028266	N/A	MSVGKNVSALTVRCASVCIERVKWLAFLLPVFVLVGATSCTTLVNRRDLYSPEPAPTSLEAARQWYGGTTISTTTTIQTQRAAGEIAAPDFRY