Scaffold Ga0193750

Basic Information
Taxon OID	3300021413 Open in IMG/M
Scaffold ID	Ga0193750_1000015 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021413 Open in IMG/M

Scaffold ID

Ga0193750_1000015 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	124391
Total Scaffold Genes	143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (41.26%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

124391

Total Scaffold Genes

143 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

59 (41.26%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8924	Long. (^o)	-106.9111	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.8924

Long. (^o)

-106.9111

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000116	Metagenome	2132	Y
F001737	Metagenome / Metatranscriptome	644	Y
F003719	Metagenome / Metatranscriptome	472	Y
F013578	Metagenome	270	Y
F041921	Metagenome / Metatranscriptome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193750_1000015113	F003719	AGG	MKAIVQTANVEGETILLKELIPFWFAVSSPLVGILLGLLGAWLITWLSA
Ga0193750_100001516	F001737	AGGAG	VKALIFVFVLCFFDGLILRADTASPGKAAVQSNGDIPKEYEIGEKSLSPDGRFAILYPIRGDDSAELPPNLLVCLKPYSVLTRIGTEGGRWQGARDQPLAKWNGNSIVAIWIAARWGMKDLAIYEIEADEIKRIQPVWRRVWLLFDHDFRERFLSKYPDEKGSGVIFVSKGGPDSKPELEFNGHKMLLNLFADNKPDLSVTPHWTASLHAVWNLDTAELEHVDFRPGPIELRPNY
Ga0193750_10000156	F041921	GAG	MIDVRLTSEAKYRIPFTFIEALNEGTLFDRPAHAFLEAARERRLFHVLNRTTDNIIGTGIIQSASGDERSPKEAEVGALMFHPAARGFGLCSLLVKIMMVYAIKESGRDSPDEEYLAHVVDGNGLPQLTARGRLQANRALSMCTGVISMR
Ga0193750_100001582	F000116	N/A	MPKRPETTTSKATRQIRPPPLSQHLREFASRPGAWVVLARNMIPVVGIYAFGWSAAVAVFNYWFDGLSALAAIVAAIIPRAMRESQSKREHATWVGNVVRGAFVWLLLVVVVGLPYWIVLIPLHDLLLGDELRRQLAHSPALCFTFGSIAASHFWKAFRMGYDTMPDQELKQRARWDLYLLILRAVAMFFMAAHGLYFILVPLMALLLSYLEIWPDRAIGAVFGDPSRLWEYDPGDPTSNRRLP
Ga0193750_100001587	F013578	N/A	MKIEFRLITAAVIAVILIAPIVARAGSRSHTLSEDAALDLLQRTLKRDRVYEKRISLGCIAYGTEETTNAYFEFVLREIHNAKCGGDLETSPAIDRYRVYRRSGKIQQWEAFDDKWQPYERAAN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193750_1000015

Overview

Ecosystem & Geography

Associated Families

Sequences