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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021413 Open in IMG/M |
| Scaffold ID | Ga0193750_1000012 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 144092 |
| Total Scaffold Genes | 161 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 76 (47.20%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.8924 | Long. (o) | -106.9111 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000959 | Metagenome / Metatranscriptome | 821 | Y |
| F015405 | Metagenome | 255 | Y |
| F021874 | Metagenome / Metatranscriptome | 217 | Y |
| F039818 | Metagenome | 163 | Y |
| F086884 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193750_1000012118 | F015405 | AGG | MWSNNLFHNFWRVVFLALLVCFCSCEGDLFDSDSKQIAHGYRLKRIGNPSQFAFLAPYDTGGLIIDEVGWRKPFVLARASGSEYRDRIDTDRAQHIRISDAERRSDPRYRSIPIESAAIAWSHLERHKRIW |
| Ga0193750_1000012127 | F021874 | AGAAG | MKPTKVIAIISVVCACVAASCLNAATLPAGTTIAVSTVSAFSSKTVAGRSFEAKLAQDVSVKGHVLMKAGSKVFGKIASSRSNPRKNDPLTVELTSVSVNGRNVAVKTNTFQPGSPPVTARQAQYGHTAGTLMITPGTLMQFQLLQPVTL |
| Ga0193750_100001248 | F039818 | GAG | MQLRLFVLVGLAAIIVCGVAVFYTHRSAHGATAEERAAYESGEKAAGEAPRGATLPTEAELNTTAQKYFEQQGSAEQLRNPSRAGTLEACKQAYKKGYTTGFKKTHPQK |
| Ga0193750_100001252 | F086884 | N/A | MSTAREIEEAIRTLHASERNKLLQHIPALFPELAGDAEWQRIIQDERQRPELSKLLDETQEQFRRNPNAFSEMKTSDFSE |
| Ga0193750_100001264 | F000959 | N/A | MKPILQINHKQRGSRRDNRARRSHKSFPLTDYNYHPTAETQVNSSVGWRATKSPAFHKLSSEFLGGETSRDFVAELLFFIVITGLAVWPIMSMLIAVIRMIRNY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |