Scaffold Ga0193750_1000010

Overview

Basic Information

• Taxon OID: 3300021413
• Scaffold ID: Ga0193750_1000010
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 152687
• Total Scaffold Genes: 136
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (40.44%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8924
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001033	Metagenome / Metatranscriptome	799	Y
F002312	Metagenome / Metatranscriptome	572	Y
F003167	Metagenome / Metatranscriptome	504	Y
F006437	Metagenome / Metatranscriptome	373	Y
F022495	Metagenome / Metatranscriptome	214	Y
F056978	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193750_1000010113	F006437	N/A	MLAAGFVVAEENDTLSSRTLAAAEADFNLACSNDQMTARAIGERTVDLLGSFDPSDGGQSSRYSVSLDLENEDSDWSFEVSVTVQF
Ga0193750_1000010124	F002312	N/A	MKSVWRKHLIICLVLGLLAIPVYFLDRALLGGGRGGNWITLDFRGLIFWSYITLVAVHVPLSSVAVLLFPKAGALRIHLGSMFLSVILLVAGVAVYGKVRRLAVSNEYRAVMESRRPLVNVIELKEWSYFPDESHPTEIRVNVVVHQSGRFAGNVTGEQTDSSGSSTTIFESTNGPETQRQVRSGEAFMYAFPLKFLAAGPADHVRVILYLFKAPSGPATGDIAKVFLRSPQRDDDGEYFYGVLPPPSQAVAEPSAPPANE
Ga0193750_100001085	F022495	N/A	MRKLTPTLTQSGLLAVLLQRQGDKISQLALRRAQRNQMRAALWITLTWPWRAFTAPMPVRRSRRAFVGYLPRRS
Ga0193750_100001090	F003167	N/A	MEQTITQNGALFAVQHRPVKRNYSQHHHRQITSPNKTISTLRTSVGEFVFRQTQLGCYLELVVGNARWALGLYGTDEAAVRALKNGRTGFRTWDTLGRKTAANQIGTLSRWNKGEQTA
Ga0193750_100001092	F001033	GAG	MCQPSLIVRLTIAVFVFLILGVTSVIHAERPDSTAGTSNAGTRKLFIDTSSTSVALRAKASLIVSPLAHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQTGTAINFTGKAVTHKDGRTHIVLGRATPSSGNRGGVTFSIITDDAKIVFDTSYHFGTQPGT
Ga0193750_100001097	F056978	AGGGGG	MRRTLKRTKSKKQQGSVRNLKPVKEVKGSGKIEHAVEHHDTAVTEDAKELKKLREEVTQIKSDIAHILEALQTLETWVPMSRTEIPQYAWAYRKFVEITTHLRKEARSR