NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193750_1000008

Scaffold Ga0193750_1000008


Overview

Basic Information
Taxon OID3300021413 Open in IMG/M
Scaffold IDGa0193750_1000008 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)156604
Total Scaffold Genes140 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (32.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8924Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017277Metagenome / Metatranscriptome241Y
F019698Metagenome / Metatranscriptome228Y
F027621Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0193750_100000858F017277GAGGMKIISAGIQRPAVIILALTSFLLLTAYQASAQDNSRAPAQKGDDFTFSHDVSAETIRFEAVNPRTQVAGRMTVSVTGAVRGNRLWDGQSPVGSHLQGEQQATFSFVPYYPYSPSYSATVRLLQVAGDTTNDSIFLDFGLRATGSDGSVQWFMLREVVTATEEDAHIAFQQLRLPAQLITQPDLPCGTVLD
Ga0193750_100000864F027621AGGAMNQHSKRGGQANGKSVDEVRRGATRPAVVVAIVLCVGFAVAMVAIWPFRKPRSHQEMQTQPKAAVQTEIPEPEQTEIPKPEAVSRVPVPRRAVPLEPSTATPVSQANPAARQLMDGHVNSPASVQDGRVNSPANSPTPVQDDQSYDFSHDLNEETITFEAVNPSTQVAGRMTVTITGAFRGNRLSDGESPVGSHLEADQQATFSFVPYYSYSPSYSATVRQLRVVGNTTDDSIFLDFGLMATGSDGSSQQFMLREVVIVTEDRAQVTFEQR
Ga0193750_100000894F019698GGCGGMKLIRTLLAGEGAGVCPGVGEGDTDCSGEIDGKGDSPGVGEGLGLSDSCAAAIATKPTQKSKVRMLKRRSAIRDLSIVAPVHVRKNIVPPFAVAQKFFIEIICDQLIVQTVKASKVIDCSLSGVFACSPGFH
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