Scaffold Ga0193750

Basic Information
Taxon OID	3300021413 Open in IMG/M
Scaffold ID	Ga0193750_1000006 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021413 Open in IMG/M

Scaffold ID

Ga0193750_1000006 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	179969
Total Scaffold Genes	165 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	61 (36.97%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

179969

Total Scaffold Genes

165 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

61 (36.97%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8924	Long. (^o)	-106.9111	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.8924

Long. (^o)

-106.9111

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000527	Metagenome / Metatranscriptome	1048	Y
F001263	Metagenome / Metatranscriptome	735	Y
F004014	Metagenome / Metatranscriptome	457	Y
F008268	Metagenome / Metatranscriptome	336	Y
F010841	Metagenome / Metatranscriptome	298	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193750_1000006112	F010841	N/A	MDLHSAIRALMILLSLVSCGCHSKLGRERTAPFKIVATDAGFEAPDVVPAGLRHIVFENRGSEIHEAMLVKLPDGMTPTDYVAVVKAGSLFPKGALDYSGPGLTSPGETEEVWVKVDPGNYLIICWNNGHAKSTPVHPFTVQYAIANDEPPKEDVVLKLLDYRFELQGKLRKGRQVIRVETPGPSMHEVDFFRLRDGKTVADVNGWRKTNGRGEPPVDAIGGALDSHDIKRVVWFRREFTPGRYVLHCEMPVTTDSQTTNQQITHADVGMVREIKIDE
Ga0193750_1000006121	F000527	AGAAG	MRAALAIVALVLPNIALALPDDATLSRLLVGTWHGHRHDTEYRADGIWILDPPDEGDNTRGKWQIEHGRLIETWRLTDETEDSSSVEEIIELTEKVFKSRIILQEGPGRPEGQVLPSEIFTVTRVTEKK
Ga0193750_100000633	F008268	N/A	VTASQIIEQIERLPSKEKAEVLTALLRSQTTVRQLSPDELVALADQMVATKDPEEADRLEKEILAGFYGR
Ga0193750_100000671	F001263	GGAG	MSERLAQSLVLGGLILLLFEGVQAQPPKDPIYVKTSNGWNAVYAHGNEYAEFRVTGNRARLQDAYHILLQKGVGMMVSFVDKKEFQNDEDLLSAHSQWEIDYWHQRASRVESNTREDLTGTRKDVKVTEIRVYNDKGAQMSSYLIGLAAKDGVFVLSVSPAKKDVDPLVKELVSSFKLVPRNLDAEEAKRLSSEAKAQR
Ga0193750_100000677	F004014	AGAAG	MQKTHLLICALLLLFCPPGFAQDSSRGGSAKQDAPKVIETEDMKLAMKAGKLETAGKYDEALKLYAQAIDLKGHFTPFVYHNRGMLYLHRAKASKDRQSRIADLQRAIDDFQTSIRLGAASKDELNRGLENVATRANLEEATKLLASETHD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193750_1000006

Overview

Ecosystem & Geography

Associated Families

Sequences