Scaffold Ga0193709_1001005

Overview

Basic Information

• Taxon OID: 3300021411
• Scaffold ID: Ga0193709_1001005
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8762
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9821
  • Long. (^o): -107.0102
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006249	Metagenome / Metatranscriptome	378	Y
F030262	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193709_10010057	F030262	GGA	VATDPKRIELHLDADPCFAAAAGGAVRCLAEFAGMPEDVCREFQEATVRACLEAFELRPNSSHLIEFCRFEDRVEVVVDSNAGPAAIRLSRSVISQS
Ga0193709_10010058	F006249	GAG	MKKRLFFCFFVILLSGISSFAQQSQPQMQPLTFWYEYTVNPGKEEEFMNLVKTVGQPVRDKLMADGVVKAWGVETPLLRVPGNATHMIWYAVADYAGVDQVDSAMRAQIAKLNDEEAKSGVAKKGQKPATSVTARLGEIADMSKVHDYLTRDLVIGFGPPSGSAALPFVRYNFVKVKAGKGSDYRKAWEKYNKPVFEKLAADGVVMAYGLSVEEIRTDGDFTHYVWYAVKDLASFDKVRAAFIADRDRRSQEEQDSLTSLFVGLQDVDASRSEVVRSLIFHLPAAK