Scaffold Ga0193709_1000878

Overview

Basic Information

• Taxon OID: 3300021411
• Scaffold ID: Ga0193709_1000878
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9507
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9821
  • Long. (^o): -107.0102
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012705	Metagenome / Metatranscriptome	278	Y
F030185	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193709_10008783	F030185	N/A	VSKSGIKLGATVRLRAQSGEIVEGRVVHLWEEKSVPMVRVASGDLVYNVPAKILVDETKS
Ga0193709_10008784	F012705	GAGG	MKENFQLKDLVFNRNTKEDGTIRRVYETNGVAMYEVAVPQKRDTWEAGFYISDWAEDVLQLSNNELLKSSRAVHAFRAY