Scaffold Ga0193709_1000144

Overview

Basic Information

• Taxon OID: 3300021411
• Scaffold ID: Ga0193709_1000144
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29770
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9821
  • Long. (^o): -107.0102
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009833	Metagenome / Metatranscriptome	312	Y
F030173	Metagenome / Metatranscriptome	186	Y
F036440	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193709_100014413	F030173	AGG	MNARANTSSRPKPDLEPTGSQDGSHPVAYAVVSGIAVGLLLLLVGLLSDTLDTYFNAIGPASLIGGTIVALFVWRRERQTSFVRPHGYEHADPSNLRPKDVWTPEPQHLVPFGPYGAGQWTAHPIGVVIVIGLVLMGLVSRTPVSDLIFFSLLGGAVVGMLLWLYHR
Ga0193709_10001442	F036440	AGGAG	MSSHDSFAASGNSPTRSDGPDFRCENHGSLFLLFPLTRHAHSWIEEHLPKDAQWLGTAVVIEHRYIWTILDGIQASGLAVTRG
Ga0193709_100014436	F009833	GGAGG	MHSPFEILKKEPAGSFRRFEPVSDLAYANMRIKELTMLSEGEYVVFDQRTHNEIAVGRGFWVDAKRE