Scaffold Ga0210383_10002828

Overview

Basic Information

• Taxon OID: 3300021407
• Scaffold ID: Ga0210383_10002828
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15605
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (55.56%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014638	Metagenome / Metatranscriptome	261	Y
F058302	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210383_1000282814	F014638	N/A	MAKLGFEAFDVTVKVPGNVPALVGANFTVIVVLCPVVNVTGGVIPETVSPAPDAPTAEIVALVPPVFLIVSV
Ga0210383_1000282815	F014638	AGG	VGEAVKVAGVTAVPLNEMARLGFEAFEVTVSVPGNVPADVGANFTVNVVLCPGVNVTGGVIPETANPAPDSPIAEIVALVPPVFWIVSVWLEVCPTVTFV
Ga0210383_1000282816	F014638	AGG	VGDAVKVAAPTAVPLSGIDKLGFEAFEVTARVPGNVPADVGANFTVNVVLCPGVNVTGGVIPETVNPAPDSPTAEIVALVPPVFWIVSVWLEVCPTVMFV
Ga0210383_1000282817	F014638	AGG	VGEAVKVAGVTAVPLNEMARLGFEAFEVTVSVPGNVPADVGANFTVKVVLCPGVNVTGGVIPEMLNPVPDAPTAEIVALVPPVFVSVSV
Ga0210383_1000282818	F014638	N/A	VAAPTAVPLSGIDKLGFEAFEVTASVPGNVPADVGANFTVKVVLCPAVNVTGGVNPETVNPAPDSPTAEIVALVPPVFWIVSVWLEVCPTVMFV
Ga0210383_1000282819	F058302	N/A	VNVALCPAANVTGDVIPEMLNPVPDAPTAEIVALVPPVFASVSV
Ga0210383_1000282820	F014638	AGG	VGEAVRTAGVPSAVPVSGIDKLGFDAFDVTITVPLNVVMLVGVKVTVKVVPCPGVNVTGGMIPETVNPAPDSPTAEIVALVPPVLVIVSV
Ga0210383_1000282821	F014638	N/A	VAGVTAVPLKGIDKLGFDAFEVTATVPGKEPAEVGANVTVKVVLCPGVNVTGGVIPEMLNPVPDAATTEIVALVPPVFWIVSV
Ga0210383_1000282822	F014638	AGG	VGVAVNVAGVTAVPLKGIDRLGFDAFEVTVTVPGKEPADVGANVTVKVVVCPGVNVTGGVIPEMLNPVPDAATAEIVALALPVFLIVSV
Ga0210383_1000282823	F058302	AGG	VPAEVGAKITVKVALCPAVNVTGGVIPEMLNPVPDAATAEIVALVPPVFVIVSVWLEVCPTAIFV
Ga0210383_1000282824	F058302	N/A	VKVALCPAVNVTGGVIPEMLNPVPDAATAETVALVPPAFVIVSVWLELCPTVIFV
Ga0210383_1000282826	F058302	N/A	VPADVGANFTAIVVLCPAVNVTGGVIPETVNPAPDSPTAEIVALVPPVLVSVSVWLEVCPTVIFV
Ga0210383_1000282827	F058302	N/A	AFDVTVAVPGNVPAEVGAKVTVNVVLCPAVNVTGGVIPETVNPAPDSPTAEIVAPVPPVLVSVSVWLEVCPTVIFV