Scaffold Ga0210383_10000278

Overview

Basic Information

• Taxon OID: 3300021407
• Scaffold ID: Ga0210383_10000278
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49884
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (73.02%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000540	Metagenome / Metatranscriptome	1043	Y
F001209	Metagenome / Metatranscriptome	747	Y
F005065	Metagenome / Metatranscriptome	413	Y
F018222	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210383_1000027844	F000540	GGA	MAKKKATHPLPKLTETEQDLLSHIQDGYQLETDLLGGNPVLRHLKDNEEIRPLSANRNTIKALEQRGLISPEKGHAPLTIVWHLKKKRD
Ga0210383_1000027847	F001209	AGGAG	MSSRVNSTRTPDILVRNEGTVFLFCPLTQRSKQWIDEHVQDALWFGTVLVVEHRYALGLAVGMKDAGLVLE
Ga0210383_1000027856	F005065	AGGAG	MMDANHISERLGSLRQEISDLRITTARYWSKSQHTALEESAFALGKGRLLQIKREVSDMMKRCA
Ga0210383_1000027857	F018222	GAGG	MVRDPRKTWQYFAQAVIQEDDPEKLTYLMQQLYRVLKDDGVQPTRTF