Scaffold Ga0210383

Basic Information
Taxon OID	3300021407 Open in IMG/M
Scaffold ID	Ga0210383_10000061 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	122715
Total Scaffold Genes	116 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	100 (86.21%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

122715

Total Scaffold Genes

116 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

100 (86.21%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000807	Metagenome / Metatranscriptome	883	Y
F011960	Metagenome / Metatranscriptome	285	Y
F026083	Metagenome / Metatranscriptome	199	Y
F043500	Metagenome / Metatranscriptome	156	Y
F044033	Metagenome / Metatranscriptome	155	Y
F060175	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210383_10000061113	F011960	AGGA	MVLLAKIALGFGATVVMAGAYTFHEGLLRVDVDETHGKGSHVHVWVPAAIVPMAMHFIPRDRMHDAGERAANFMPLVHAVAKELQKYPEAELVEVHDGMQHVHIRTHNGNLLIDADEPGQTVHVSCPLTTIDDVSRELATFAPGS
Ga0210383_1000006117	F060175	AGGAGG	MRISRLQIVGGVALLFVVLAVGLRAQDQKSPSLEEQRKAINLVRAINTAEVRYSSGVSHGRFASWTELYDSGLLKGLELSAGPEVIPGYRLDLLASADGKSFMVGLHDTKDGDGLFSVFSDQTGIIFLGAAAR
Ga0210383_1000006122	F043500	AGGA	MKNLKALLPKTVWIGTLGVAAMLLGWTPSCKAQEVSPAIFTDTGVEDAYPVTKPLAKKPVKVQVAAHVNQSVTNYDANYRKQNAQRVARKVNVVSAPGA
Ga0210383_100000614	F000807	GAGG	MKLPMKQMRPNGVDLVCWSGVVMPCKSCGSLNQSKFNGEIVIHSRGLKNIDKPAVFVFAEIDVCLVCRSAEFTVPVAELRLLEKGHAAAASKT
Ga0210383_1000006163	F026083	GAGG	VGAITFDYAVPLEKTMAFESVYHPNLQLELSEKQEVWNTPGAFFVWMFVGGELAGESYGIPLASPTDFLDDLLVLPASEKEKAVCCYSNTILPRFQKRGYGAILKAHWLGLAVGKGYDVVYGHARPGGSQALNAKFGAVFLEDLPDWFGSGEDYKKYRLVLNPSAKG
Ga0210383_1000006189	F044033	GGA	MSRSRAITVNAEHKGIELQIDADARLAAAAGGAARFLGESAGLTGEEVAELQKSVVAACEEAFEHLTGEHAHLTVKLERFPDRIEVSMSHEGGAEPAVGLDRIAGFATQIGSAGGLGGVDRVQYEAHNGIAVTRLTKYLGRAPHIA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210383_10000061

Overview

Ecosystem & Geography

Associated Families

Sequences