Scaffold Ga0210383_10000060

Overview

Basic Information

• Taxon OID: 3300021407
• Scaffold ID: Ga0210383_10000060
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 123251
• Total Scaffold Genes: 114
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (73.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007329	Metagenome / Metatranscriptome	353	Y
F015893	Metagenome / Metatranscriptome	251	Y
F076300	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210383_1000006011	F007329	AGGAGG	MKKLHVAVIALSVATLGIPALAFGTPQAMSQDENKPELVNIKGTVKADGDKIVFVSDESGKSWDVVNPETLKEHVGHHVELSAHVYKEKGQIHVMTVTMLKQ
Ga0210383_100000604	F076300	N/A	VPVTVAVKESVLAVGTAAVVGLILSKTEAAAIRVTLAEADLVGSATLVTITLTVAGEGTLAGEV
Ga0210383_1000006047	F015893	GGAG	MSTQENEAPLKQPWRLSLDSWAVVVALLAALLVRAGVFKHIPW