Scaffold Ga0210383_10000035

Overview

Basic Information

• Taxon OID: 3300021407
• Scaffold ID: Ga0210383_10000035
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 149949
• Total Scaffold Genes: 132
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 102 (77.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000043	Metagenome / Metatranscriptome	3655	Y
F026628	Metagenome / Metatranscriptome	197	Y
F030510	Metagenome / Metatranscriptome	185	Y
F048471	Metagenome	148	Y
F094182	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210383_1000003527	F048471	N/A	MLLFLLAMPVPASVATATGHFEVYCDGVGIFLARIDGTPAPGKLVLFSLKGFPPGTLGGRIYGQGKWSDVYVFRDGCVPDGKCDSIANGKVWIDESDMPDTGDRTPKRISGKYEIDLNGKHLEGAFVAKRHVSKPPLRLCM
Ga0210383_1000003563	F094182	AGGGGG	MNGVCVPERALLSRLAFRIFLCAVLLFGSPTFFTTHLCATSVVALIDRANHKLVIAADCRINRGLRPVSACKIIQEPGCTVAMAGLYEERNSGFHLREYVRVACREPGDLRTKAEAFVRMARRPYEQAVRVMRESQPADFAKTMANKPTEVVFAGIQDGEPGLIVRGLETDATGKIRIERFESTAPSYARIGYFIGLNGHIRAYIKSHPEWGKEDYAKLAPKFVELEIEAHPDLAGLPVSALQIDNKGDVVWLDKGACDARQSD
Ga0210383_1000003570	F026628	GGA	MMAVKDVSKLLADIPRVAWVALSKDEERVIAYAAELQEVLRKAKEAGENDPIVTRVPEVDGATLFL
Ga0210383_1000003579	F030510	GGA	VAAQDNADAGSIRNAIRWGLLLASIATATFRLPRLVNEYRAWRDALGLGDTSASEGWHRVLTVELIGVLVVLAIGISVFYILRPKVKAAE
Ga0210383_1000003580	F000043	N/A	MIYQLGWTTLPGLRGLSVSEFRATPTDAPDNTSGVAIEFASGAECDSFLKQLEEHFVPRRFTNAANAFDSVKAYVLEYAAKR