NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10000022

Scaffold Ga0210383_10000022


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10000022 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)200388
Total Scaffold Genes157 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)124 (78.98%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000168Metagenome / Metatranscriptome1799Y
F000532Metagenome / Metatranscriptome1046Y
F016077Metagenome / Metatranscriptome250Y
F062026Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0210383_10000022118F000532AGGVNLIKNRLNMEVVLTPGKTGQFDVVADGEKIAERGGNWLTRSLGAGYPDLDGVVEELEKRRK
Ga0210383_10000022143F016077AGGAMSTAPATAASSHEGTSARFRNLLIGALFALVLLIPKLLRIRRNAQSWMAFRVFLGFAGAALVVLPLGLWNSWLAAIAGLGMFMAAILLPPAKPQNVSDEKARELGALVIVNGGKYQPPDAAPAPVQLFVGAEQIWALDARFQPVFVIPAAEISSANVVQYEDRWILQVRWLDNTAEFSYQGVFAEHLARVAQSTLGGVMRSPLPILPRSRAASA
Ga0210383_1000002223F000168N/AMTGEKQIMAEAPAELAQRLAEGLQRERVVPRFVDSYVVEHGRHALQVHASLYRDLLELLRREALLAVTARALEITYAEPLPAGRAKPRPMLRKDGAAFRRKYLAALTRQQKWSAGDALDFQTDLQMYEDLLARNSASRRTRKPFEAANHPFVDRCAFLLDSSFLEKARVAASRALNELENLAGHVTGSVLHGKEAAPARRKR
Ga0210383_1000002299F062026GGAGLSCPKCKSEDNQKLTMVMSASGLFGKILRFGSVYVYNVWIPVASVFFGIVFGLFSGYLGFFAFTGTLIAGFFARRWVKAKTRSKFADLSDNMKQSGFQCKRCEHLFIPVESLPAPKMYVASA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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