Scaffold Ga0210383

Basic Information
Taxon OID	3300021407 Open in IMG/M
Scaffold ID	Ga0210383_10000010 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	251680
Total Scaffold Genes	233 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	189 (81.12%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

251680

Total Scaffold Genes

233 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

189 (81.12%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007725	Metagenome / Metatranscriptome	346	Y
F011263	Metagenome / Metatranscriptome	293	Y
F027252	Metagenome / Metatranscriptome	195	Y
F028254	Metagenome / Metatranscriptome	192	Y
F080260	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210383_10000010125	F011263	N/A	MTMLTPQRALRLMIEVIFLLLGVLVIWLALTGRVLVERHKPSWLILSGALILWGLRALYGPNKWWARWENWTRGLSLTLLGVVMLAIYRVPFLWVAPLLATAGVLMSLRGVIGAALVFRP
Ga0210383_10000010165	F028254	GGAG	MQCKDVELVLEQEGLEPLPDEARAHLAECRECRNYIADLTSLVDAAKKLPPEITPPDRVWISLRAQLEEEGIIRTPADVIPVEQVSLWQSINAFFSNRTLATGMVGILLAAAIVFQLRRDRVVTEVPPVQTAKVQTVVAPVKKTVSEPTAAAQTVAQSVTPQPSGEFDRTARDLNDQEPVATGMLLASSSPIDASLRDNLKKVNEFIAECEKHLKEQPQDELTREYLSAAYQQKAELLSAMIERGRSIN
Ga0210383_1000001032	F080260	AGGA	VEARKFTPAELSGLIGEAVAWMQQQRDHYLPLSDPLSETVKSNLRPFFPADILERLRIKDVSTTGGVIPYPPFYERVRAGGARVVPDAAHMTAIPFIDVGLFNRQPTLRTIFHTLVHVTQFSVIGLERVMAGYFKALNESGLWMVVPYEEQAYNLDARYTKDPDEAFSVEAEVRDWLRSGKF
Ga0210383_1000001056	F027252	GGAGG	LRHFLLKTAGPLFTVLLAIVVAMGAVSPALAQEKKSPQTDGVDNTKMGAYRAIAQHAYLEFQKGDYAAAAQLARSLERVWDKGEDYGGDTALKKTHPDFFEQIDKAMDDFITPLMEYKTKAPDQARIKAAFNAYMEKLKLAD
Ga0210383_1000001063	F007725	GGAG	MRFRTILSLSTFFLACFTLAVFAQPSPANAAGHSASLAPENQSVAGQIASVGDAAFAINIAKDNQKPETVEFLVDDKTKVEGKLTIGAQAMVEYRSDSGKNIAVHVVVTPASGINPY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210383_10000010

Overview

Ecosystem & Geography

Associated Families

Sequences