Scaffold Ga0210383_10000009

Overview

Basic Information

• Taxon OID: 3300021407
• Scaffold ID: Ga0210383_10000009
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 281449
• Total Scaffold Genes: 258
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 213 (82.56%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000169	Metagenome / Metatranscriptome	1788	Y
F000678	Metagenome / Metatranscriptome	940	Y
F013955	Metagenome / Metatranscriptome	267	Y
F016891	Metagenome / Metatranscriptome	244	Y
F018213	Metagenome / Metatranscriptome	236	Y
F026069	Metagenome / Metatranscriptome	199	Y
F032360	Metagenome / Metatranscriptome	180	Y
F038866	Metagenome / Metatranscriptome	165	Y
F085956	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210383_10000009117	F085956	N/A	MAFDIVRWDDMAIRRASRDPNALVYGAALSALSAAIIFLVTALPGMLTREGESPEAIFMGLLLGLVFFWTYMGIIALIQIGLCHAIAKIFLGATGTLVGVMRPLFLGWFVNVLILIPVVGVFAVGIAWTAVLMLVFEEIDGIGRMQAFLISAGINAVFVAMQILIPH
Ga0210383_10000009119	F038866	GGGGG	MTWKDEFLMLWIFCSVVIALAARHFLGGAVYLVKQMAVFSLAYLPGLLHLLTGHLH
Ga0210383_10000009129	F018213	GGAGG	MIATLHFATLVFTTLFAAAAAVGFNWMLLRAMFVLMRPATARRVNSPTHLVRGTTQLTRAYASHR
Ga0210383_10000009131	F000169	AGGAGG	MAKKSKLNQVAASIGGAFGKADRKAHQVVRAGTLAKKELHDISKQVDALKRQLAKTTKRLKNALS
Ga0210383_10000009151	F032360	GAGG	MGKEDAMGETRRRFLMTLAAAASCSVVTDESMFPQVRKNNPFPTPPESAETQNPAEAAAAKSNPPNAKRAALQQNEKEFRAEVDRLCQLAGELKQEVDKTVTTEVFSVQMYKRTEEIEKVAKMLKSKAKG
Ga0210383_10000009161	F013955	GGA	MGAYLRRNCCLALAGFFLCFGAAAQSQNPQSQNAPPKDTKSQKKSKHAKPVETSIQNYYGGVFLVGDGGIPNGPCFRINGRVTSSGFFNDLKSYDNDEGTIFRLGAAEVTQFPDKLLLSLRIRDQPCGFGLQPVGTGVYLTQETMHSMKLTLYWKHGVDLRPAEKVAIVNVSVDPIEPYATNLAAELPKRYLWSYEFGIPAEGVPLTDSLVLVFRTADGHIVARVAARL
Ga0210383_10000009177	F016891	N/A	MLRAVLSVNECERVVSKHPATFFGENFPSLAEGSGGAGDFAVLKFAAEESVGNWRPGFYRLDSNLVELNDALRDLQR
Ga0210383_1000000963	F026069	AGG	MWIQLLGPFLALLPSRWRKALPFYQAVRWRSAAILSGLAESVIALTGLMYWYSYSVTTWVSRALDNTLSKSAPTTITDHEIGFAALLIWATHPLTWTIVYFGIEGMARACAAFTDTVLGVFPLYLLERIYSKIFRRGEPEPAGAVKFSQSHISSYVDTMKEKVVTARLSPVPDELCFARNGAEEILEIRAWCAKPDWTPPRVVRYEDRYYRLEECSRGSGARPFVYKLRRLAAGVPGRTVLIYSPDEAPILASR
Ga0210383_1000000981	F000678	GAG	MDKFEEFGRRIDGEVSRLKKINNFEDFGKRVDEELARVKSFVKEEVAPETEKRTAQFLREVSEKLSEAAGWIESRNSARTEKDSQKPPSQS