Scaffold Ga0210389_10000005

Overview

Basic Information

• Taxon OID: 3300021404
• Scaffold ID: Ga0210389_10000005
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 290370
• Total Scaffold Genes: 276
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 200 (72.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000579	Metagenome / Metatranscriptome	1011	Y
F014647	Metagenome / Metatranscriptome	261	Y
F092415	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210389_10000005189	F000579	GAGG	VAVDSATTISVIDFRRQSMVLQWHSLGGTWTAYDTPPVLVHGIALIRPTGPNICIYGQAGRLRLQVGPNQYALAENSPRISCTRGIASFGFRRRFTVRSSTGGVLFSHSYWTNQGRDFYRWLADKAEDPDWRVSCGRQWSDGVPSATLRPR
Ga0210389_1000000559	F014647	AGTAGG	MSPKLRRNFSGAFQPKSLGDGAWQLSRPAPQEIEVILRNAEHGAAQAFGADPIVDLGIEWHAEKVLLTFMSGERAESVAAAGAIVHEPLERLYESLPLASIDADARRFWRRVFRLVRIPGGRYLLKVLTRSRGR
Ga0210389_1000000584	F092415	GGA	MPDQPNADELDDYLQGDSDVSCQYRRESSPAPPHALDRSVLEAAGSLGPKAPTRSQSLAPLAFAASVLLSLALVLAIVFAPQVKRQDSQPQVVRVRMFKSEPPRAALASPRERNPALWLADINALRRAGRHAEAVVEMRRFHSAYPDYIIPINE