Scaffold Ga0210397_10000047

Overview

Basic Information

• Taxon OID: 3300021403
• Scaffold ID: Ga0210397_10000047
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107826
• Total Scaffold Genes: 109
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 92 (84.40%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000262	Metagenome / Metatranscriptome	1428	Y
F001966	Metagenome / Metatranscriptome	610	Y
F021198	Metagenome	220	Y
F022721	Metagenome / Metatranscriptome	213	Y
F075893	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210397_10000047104	F022721	GGGGG	MAAYDEMSEAERRRLAEVLGSLTGLQGGPTGSLPDGTHYEYDPILKVTVEVTASGERYPVTLVDGRFIREGERAVAHKTGE
Ga0210397_10000047105	F001966	AGG	MEKPDPYGEWVLFGTKQEPGENPLPVDEDLLAAAREAWPHVLAHARRELGDKESGPNRTALAADVWERVLRSVVKTRQRSRDRQPPISDLESYLIGAFHHRFNRVLKNEHKRQETIELVASTVDLELIEGALDTEWAGELERAITLKQITNRMDGWTRKVWQARQYGYSWKEISTWLGVSEEQARKKFEYNLEKLRQSIVRLLKRKTLRPVV
Ga0210397_100000475	F000262	AGG	VKQFILIRSITLLALLCAACNGTDYGVLQPNPEDLCKCLPIEPDIADFRHSEKHVPIPNTAAQEIGVDTILSWTQDEFVAPDAPRTGRELQVFHVANAFLQVASVNAADCDVVFEISMTPDKNAPRVIVETPVDNEFCSARQNAQSQLAKHGFKLDSQHGGELPQALPVSVLGMAFEDFEHNRGSAQVATLWELHPAIVTFP
Ga0210397_1000004770	F021198	GGAG	MSANRGIWAVRLPLSAVLDWCKRTVGRYRRVAGRIADQSRLVRRENQFEAARAMNASHPLLADLAWERVELNEFTKALSIGDRIRVLCDDGVLVAEKISETQFKFIHAEMLTDLVH
Ga0210397_1000004776	F075893	GAG	MSSSARLAEQGDNEEALRLLYGVIASAISEKENRWVLTLSHHAAVISNFLGNWSQAKHYYEKSLAFNPENPRALSGLADVAKEQGELELAKQYAARCYKALIEGDDFLKRERVETLLKKWPGVSQP