Scaffold Ga0210397_10000014

Overview

Basic Information

• Taxon OID: 3300021403
• Scaffold ID: Ga0210397_10000014
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 223822
• Total Scaffold Genes: 216
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 169 (78.24%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011628	Metagenome / Metatranscriptome	289	Y
F014537	Metagenome / Metatranscriptome	262	Y
F017063	Metagenome / Metatranscriptome	243	Y
F017570	Metagenome / Metatranscriptome	240	Y
F030272	Metagenome / Metatranscriptome	186	Y
F052910	Metagenome	142	Y
F056943	Metagenome	137	Y
F073931	Metagenome / Metatranscriptome	120	Y
F079284	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210397_10000014113	F017063	AGGAGG	MTDLRALAYEFLHEAQHSLKGDGYLNPTAIVITPAENLIFDIEFETEEERDEIYAEMMEVAHEKNAGAIITVNDVYSDDAVGAPVQLQGKGWGTLAESAAEAIVITVSGGGFETWSLICSYFRREEQISFHPAREFRNPGGEVELLGDWTGKTGAA
Ga0210397_1000001412	F073931	GGGGG	MRLNINLASQKYEDVRRFYQLWTIAIGSLSVLTLLLIVLTLMNYTGAKKSNQHIKELQARIDSLQKERAQAEAVSNLPENHDVNMQKNYWNKQIYRRQLSWTQLFNDLQKIMPARAYLSAVHPEITQDNRLRLNLTIKGDTYGNGLELVQKMEKSERFRGPQINSETVEKDQRSAQQTYKFEIVTYYTPAGGTQNRVASKEGM
Ga0210397_10000014147	F017570	GGA	MKKLNILLAFILLSGYLIAAQQESLSPDLKEAVMHDSACAVSADVASGEPTLTETTIRSGGRDVGEIVEVQGTCHCQSTNCDSLVYLRNGQGYRLALREKYASLHPMKIVKLGMPSLTGQFELGPQKMETTIYDWDGKDYKPSLCATVIKDRKPPKIERHACKVGQ
Ga0210397_10000014158	F052910	GGAGG	LASNPVAPISTADQLSQALKTVTEAALFIEQLLSASGVNGFDATQAEQITTAFSNLATIAIQAAHDAAGKPITADSVLTLMPVNTALNDEVVAG
Ga0210397_10000014162	F056943	GAGG	MQFHFSDVVTAANLLVLLGIYRKLSIIVYQHKLMWLDFTDRKGIRANGKHVESV
Ga0210397_10000014174	F014537	AGGA	MLKQQTIATSMGQLTVSSLTLGELRQLDSLFQEKSDNSGLAALLRYLPVVLNAVRKVHQDLSSEQLENGLTFDDFNALFNAVLEVSGLKKAPAGEPTPVPA
Ga0210397_10000014183	F079284	GGAG	MKWISEYTIDSAGQCRWHEGLRIYDDQIKEAYRNNALVEFIIESSAVMGVKVGIA
Ga0210397_10000014185	F030272	AGGA	MSKNSLIFIIAALCITITLTLLAQTASQFPELDKNGKPILPRPMPHVVYSPSDLAHSAVTLPASIGGATTTTNIIRIGDATKLTVFASCSQNFDLVMNVYTADDQNQSNPTFTLYNSYTVATAMASGSQQAYIASELAPTVTSGTLAAPVRLPQLAVSFFEKNDVAVAGACTDRVIVGY
Ga0210397_1000001437	F011628	AGGA	MKNWYLPATVLGLAGLGLIFASERGRERVRHFVDDFLRHGDPIGEFGKFCDDQLATIQESLDRLSEALEGPQTS