Scaffold Ga0210397_10000013

Overview

Basic Information

• Taxon OID: 3300021403
• Scaffold ID: Ga0210397_10000013
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 228268
• Total Scaffold Genes: 205
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 171 (83.41%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000304	Metagenome / Metatranscriptome	1336	Y
F000321	Metagenome / Metatranscriptome	1304	Y
F000673	Metagenome / Metatranscriptome	944	Y
F008273	Metagenome / Metatranscriptome	336	Y
F013823	Metagenome / Metatranscriptome	268	Y
F037404	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210397_1000001315	F013823	AGGA	MENRKQQSGIDSVHDTSAFACGLFLTIAAILAGAGLSLLPGMGVSGMVFPGAERVALAVMVLGFSGVLVTTLLNLSDATRRTLVVLCAAALLCSGFVALVVWFAVSGASGGWS
Ga0210397_1000001320	F037404	GAGG	MTPVVALDLKRITAEVAARHGMLLRPDDPAMLLVTMNEVVLQQVIGSIEAHAEEMVAGIEVGFRSAQREALGSVEREARKAGIAVREEIQKDIDAGRLHARELIVELNRAYTRSAVRRWVAIGVVFASGLLVLGVGLGVLLARVLK
Ga0210397_1000001323	F000673	AGG	MWNKFWHHSGTTAERLVFMVKRAISRNFRYPSAELREKVRVAVKERGFRSEQAFLIAACEHELRQGDSTEATTQFEARVAATLTNLAKQGQGLHTLAQAQVALTDVLLKYVITCVVEPPEDALPAARVRARLRYEKLVRAAAKEISNKNRDTLREMLADE
Ga0210397_1000001325	F008273	GGAGG	MNSNNAAIRQDLIENSVDHQVSTLTNSAASPGQLETLLNSGLDHDLIEWPRQYLETYLDSDATGRVPLNTEQLQDVLEAAFDRDGTAARDYLEELNGERGPMNLGHSTLQIVTRHVEGKDTGYELLFDPTDSQDLKHLIEQLDIRAWEKQNEEITPTLETKPDIERRETTASVATHQPGSGAVEIHDKITGADVRKLLGGGELPAGLQSALKKMGPDALVNDAQTDSGIYRGAIIGETDKKLIQQITSRTVVIHPKDLLDILPAVGENVRIAYSNDRARVVPVKDRSKTQEVGR
Ga0210397_1000001347	F000304	GAG	MSKKLLIFVALVALLGLQFADCMSATTQDQRSMQCCGSMPCDPSNQSHDCCKGMVSPQSPSVLPVAHITLHAPVMVVTDVNASPQATPYAEVSRLDFEAPQHSPPELYTLHSSLLI
Ga0210397_100000135	F000321	AGTAGG	VPKRRSANFGVYNVRLLSSLDKLLRDKPRFMGELSTSINDALLSVDLNTVELVTLQSRQKQTGRETQVVILNRLRKRIHDVAKKRNCSMNQLVNSALLVFYSKGGESKLKKPAKGQGSSVHSYDTMTEAERRELHQMLAELSAIQSVPFEVEEPNGSYYEYDRNLKATVKVTPDGERTPVEKLETGFGPARGKAPRKIAREEITT