NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210397_10000007

Scaffold Ga0210397_10000007


Overview

Basic Information
Taxon OID3300021403 Open in IMG/M
Scaffold IDGa0210397_10000007 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)317953
Total Scaffold Genes271 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)207 (76.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009572Metagenome / Metatranscriptome316Y
F011259Metagenome / Metatranscriptome293Y
F013677Metagenome / Metatranscriptome269Y
F018427Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0210397_1000000710F009572AGAAGGMSNTIFAIWIGLSAAILLVFLYAAFINLRRRRSHAVELGDLMNSFLPVNVEVLSNLINPEQQRHLQETYGPEELLKIYREQVSLTMECLRRMSHNAALLQQVGYAQLRSGNELVASVAQEMIDAGVHVRLYTFTGLIVLQVRNMVQWLPLVSAATCCDIQNIVTASLLPAYAQLKDKADNLTCLKFNSLTESLAASL
Ga0210397_10000007153F011259AGGAGMSKQEDNRVLARSGARELTIEEIDFVSAAAHTNVCSIAIATSTHTGLGDGDGCGDSDSDTSFV
Ga0210397_10000007200F018427N/AMKLPTTTSKLLALQEATNAALHGRLEEIFKRYRGMAFIGRDDKLFSEHWTPELAAAGYVFDGFEIKEGNIVLHGTENACGFIYRINISLPTELIDHASAIEAYFQRIYAESKVGSEQFPDMPTASGQ
Ga0210397_100000073F013677AGGAMAAGDIMFVECPYGDSFPVRKTEDRSSGNQRIVCPKCGHGFDVTLEETVERLSPESKLRLLWKPTTRFA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.