NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210385_10027279

Scaffold Ga0210385_10027279


Overview

Basic Information
Taxon OID3300021402 Open in IMG/M
Scaffold IDGa0210385_10027279 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3672
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017747Metagenome / Metatranscriptome239Y
F061220Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0210385_100272791F061220N/AVLEPRSRSWKWSLMALAIRPLSVHNQGRKNDLLTEALMRLACLFCSLMALAGISAAQDTSQVTSQDTNFSAGPQYLVTSGFSPLFARPIATPSASLEAPLPEIPSLPAIGPVIENQPVAANPELPRQPDLFPIYYGPPVTSVVEISSVELPPSLPASIMDTGVTGIADPQSLRERGYGVPLGDTAAFWKAHKPHASRVYTNADVQRLRPS
Ga0210385_100272793F017747N/AMVAILPVSFQAQDAAVAILHSDGVGVRVNKSPAPASIALFSNDLIETEKAAIARIDVSGSAADINAETVVQFEGNELVLDHGSLSVNTSRGMAVRVGCLTITPVDNAEWTHYDVADLNGKVNVSALKNDVNIDERSGSQRQAKQSGHSNRVTVREGEQKSREEKCGAADIRQPGTPLAGAIMNSPYAIGAGIVTIGVLTCWALCRSDDPISPTTPKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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