NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210385_10001280

Scaffold Ga0210385_10001280


Overview

Basic Information
Taxon OID3300021402 Open in IMG/M
Scaffold IDGa0210385_10001280 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15802
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001450Metagenome / Metatranscriptome692Y
F003810Metagenome / Metatranscriptome467Y
F004287Metagenome / Metatranscriptome445Y

Sequences

Protein IDFamilyRBSSequence
Ga0210385_100012805F003810AGGMHIPENAPMWVLFAAGHGLHVLKRASLSSASRISGVTSRRVWLRVNGLALAIRFFVNAATFSYWIAHPGVATHVLGTIGIPINLTLEPSHATAALFGLSGDSMVDWVTAKVPFLQKEIPVIPTL
Ga0210385_100012808F004287AGGALETLKDNFRGAMMRNGRRDILVETQTKGDPAATVSIGSVSDQDWYISRTHGVYHIPACGKEQPYALLMITARGDAIDLGDNRRFPFTICARDIADDLLQDLQGHGIFVCAGARPTGDELTAATERRNNYYQGLIAEGDIMWARGHSFREISDLHRRAAISLGVEREWAYVPMRTSECPACGEKVKTGVAVCKHCHAILDEEKAARHGLGRQGRDPNPARLTQEPAPTVVKPATEVKSQALGNR
Ga0210385_100012809F001450GGALILVTRETHQAPAELCARLGQAGGVNFLGEPNFRVVWGGSRLTWIGGRWTDRDAEGSFVREVSELRQVPKYTPVNRWHIERWSPPETYGSPDEWYARTVEIEDGIRFPALGPYPSRGEYEHCFTLSGPNSEFIQLTATVCDWVIRAIEWARRQPKSIARAAITAREIRREAELSERTDAALDEVF
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