Scaffold Ga0210385_10000009

Overview

Basic Information

• Taxon OID: 3300021402
• Scaffold ID: Ga0210385_10000009
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 380457
• Total Scaffold Genes: 391
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 309 (79.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035007	Metagenome / Metatranscriptome	173	Y
F052770	Metagenome / Metatranscriptome	142	Y
F069201	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210385_10000009148	F052770	GGAG	MTDAKLVVLSSFRQTRAKAKDAPSPAEGLKLVTAFLQIDDSKRRAEIIRMVEEASASKNG
Ga0210385_10000009221	F035007	N/A	MNKISSRRPCHAPHLLSLGLALASFALLTGCISSDGPILTDGQPLLGNEPHLLFYVLRDGTVREPSAKTFRWQDGRYVPIGRGAKDIGPFTLHAVEGSDLIVQTLSAGKPVEYGVARKLADGVYLVAVVDESDADEATQNKFCEKPPGTACRVTSREAVLAFARASAAKPHAGTGLALLMKH
Ga0210385_10000009355	F069201	GAG	MADDARKMSWGTRRGLRHCGTAVLRLLPLLGFALMLGACTKCDVPTWQHSSTGDAPIACHDSPAPQ