NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210393_10086035

Scaffold Ga0210393_10086035


Overview

Basic Information
Taxon OID3300021401 Open in IMG/M
Scaffold IDGa0210393_10086035 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2494
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001518Metagenome / Metatranscriptome679Y
F015906Metagenome / Metatranscriptome251Y
F018405Metagenome / Metatranscriptome235Y
F035909Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0210393_100860353F001518N/AMKTLEDYNIHVDAGQPATLNDGAGKLTDCPTLQEAVLAWHALPAEQKMRATVKVIGGPVYTAHHIHRLHYEAKPNQEGCDVEGSKKQQGK
Ga0210393_100860354F035909GAGGMSKGQKSNKENKKAKADKNRVKNVSAYKAAQGLGKPASSQFGKKT
Ga0210393_100860358F015906N/AMSTGNIYKQAIKRVFADKYHDKRMAVYWGREDDTIHVIASLRHYVHKIASANEDTLEFVSSVGDCVTVKLN
Ga0210393_100860359F018405AGGVLVSWNSRRSVEGVHELVNATDVYRQAIKRTFASLYGVAPDKVDVSWSDAGDNITVRCADKTFTHETLHDDDEPTLEFVGDDAVSVRLTTAERLRLEGIDGLNGF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.